Last updated on 2022-08-15 08:50:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.10 | 5.79 | 64.05 | 69.84 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.10 | 4.09 | 45.76 | 49.85 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.10 | 90.63 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.10 | 84.66 | OK | |||
| r-devel-windows-x86_64 | 1.0.10 | 7.00 | 116.00 | 123.00 | OK | |
| r-patched-linux-x86_64 | 1.0.10 | 5.31 | 59.05 | 64.36 | OK | |
| r-release-linux-x86_64 | 1.0.10 | 4.20 | 57.70 | 61.90 | OK | |
| r-release-macos-arm64 | 1.0.10 | 62.00 | OK | |||
| r-release-macos-x86_64 | 1.0.10 | 68.00 | OK | |||
| r-release-windows-x86_64 | 1.0.10 | 30.00 | 109.00 | 139.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.10 | 59.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.10 | 73.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0.10 | 10.00 | 75.00 | 85.00 | ERROR |
Version: 1.0.10
Check: tests
Result: ERROR
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
[ FAIL 4 | WARN 8 | SKIP 4 | PASS 64 ]
== Skipped tests ===============================================================
* On CRAN (4)
== Failed tests ================================================================
-- Error (test_modify_pubmed_db_dup.R:51:3): modifyPubmedDb create is unique ---
Error in `gzfile(file, open = "rb")`: cannot open the connection
Backtrace:
x
1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:51:2
2. \-pmparser::getCitation(...)
3. \-pmparser:::writeTableInChunks(...)
4. +-R.utils::countLines(path)
5. \-R.utils::countLines.default(path)
6. \-base::gzfile(file, open = "rb")
-- Error (test_modify_pubmed_db_dup.R:67:3): modifyPubmedDb update is unique ---
Error in `gzfile(file, open = "rb")`: cannot open the connection
Backtrace:
x
1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:2
2. \-pmparser::getCitation(...)
3. \-pmparser:::writeTableInChunks(...)
4. +-R.utils::countLines(path)
5. \-R.utils::countLines.default(path)
6. \-base::gzfile(file, open = "rb")
-- Error (test_modify_pubmed_db_std.R:22:3): modifyPubmedDb create matches standard --
Error in `gzfile(file, open = "rb")`: cannot open the connection
Backtrace:
x
1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:2
2. \-pmparser::getCitation(...)
3. \-pmparser:::writeTableInChunks(...)
4. +-R.utils::countLines(path)
5. \-R.utils::countLines.default(path)
6. \-base::gzfile(file, open = "rb")
-- Error (test_modify_pubmed_db_std.R:42:3): modifyPubmedDb update matches standard --
Error in `gzfile(file, open = "rb")`: cannot open the connection
Backtrace:
x
1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:2
2. \-pmparser::getCitation(...)
3. \-pmparser:::writeTableInChunks(...)
4. +-R.utils::countLines(path)
5. \-R.utils::countLines.default(path)
6. \-base::gzfile(file, open = "rb")
[ FAIL 4 | WARN 8 | SKIP 4 | PASS 64 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64