Stability-enHanced Approaches using Resampling Procedures

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Documentation for package ‘sharp’ version 1.1.0

• DESCRIPTION file.

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sharp-package	sharp: Stability-enHanced Approaches using Resampling Procedures
Adjacency	Calibrated adjacency matrix
AggregatedEffects	Summarised coefficients conditionally on selection
Argmax	Calibrated parameters
ArgmaxId	Calibrated parameter indices
BiSelection	Stability selection of predictors and/or outcomes
BlockDiagonal	Block diagonal matrix
BlockLambdaGrid	Multi-block grid
BlockMatrix	Block matrix
BlockStructure	Block structure
CalibrationPlot	Calibration plot
Combine	Merging stability selection outputs
Contrast	Matrix contrast
ExplanatoryPerformance	Prediction performance in regression
FDP	False Discovery Proportion
Folds	Splitting observations into folds
Graph	Graph visualisation
GraphComparison	Edge-wise comparison of two graphs
GraphicalAlgo	Graphical model algorithm
GraphicalModel	Stability selection graphical model
GroupPLS	Group Partial Least Squares
Heatmap	Heatmap visualisation
Incremental	Incremental prediction performance in regression
LambdaGridGraphical	Grid of penalty parameters (graphical model)
LambdaGridRegression	Grid of penalty parameters (regression model)
LambdaSequence	Sequence of penalty parameters
MakePositiveDefinite	Making positive definite
MatchingArguments	Matching arguments
PenalisedGraphical	Graphical LASSO
PenalisedRegression	Penalised regression
PFER	Per Family Error Rate
PlotIncremental	Visualisation of incremental performance
PlotROC	Receiver Operating Characteristic (ROC) curve
PLS	Partial Least Squares 'a la carte'
PredictPLS	Partial Least Squares predictions
Recalibrate	Regression model recalibration
Resample	Resampling observations
ROC	Receiver Operating Characteristic (ROC)
SelectedVariables	Stably selected variables
SelectionAlgo	Variable selection algorithm
SelectionPerformance	Selection performance
SelectionPerformanceGraph	Graph representation of selection performance
SelectionProportions	Selection proportions
SimulateAdjacency	Simulation of an undirected graph with block structure
SimulateComponents	Simulation of sparse orthogonal components
SimulateGraphical	Simulation of data with underlying graph structure
SimulatePrecision	Simulation of a precision matrix
SimulateRegression	Simulation of predictors and associated outcome
SparseGroupPLS	Sparse group Partial Least Squares
SparsePCA	Sparse Principal Component Analysis
SparsePLS	Sparse Partial Least Squares
Split	Splitting observations into non-overlapping sets
Square	Adjacency from bipartite
StabilityMetrics	Stability selection metrics
StabilityScore	Stability score
VariableSelection	Stability selection in regression