Analysis of numerical zooplankton images

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Documentation for package ‘zooimage’ version 3.0-5

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A C D E F G H I J L M N O P R S T U V Z

zooimage-package ZooImage: analysis of digital plankton images

-- A --

aboutZI The ZooImage GUI (Graphical User Interface)
acquireImg The ZooImage GUI (Graphical User Interface)
addClass Various utility functions used by ZooImage
addToTest Manipulate training and testsets 'ZITrain'/'ZITest' objects
addToTrain Manipulate training and testsets 'ZITrain'/'ZITest' objects
addVigsToTrain The ZooImage GUI (Graphical User Interface)
analyzeClass The ZooImage GUI (Graphical User Interface)

-- C --

calcVars Various utility functions used by ZooImage
calib The ZooImage GUI (Graphical User Interface)
calibrate Various utility functions used by ZooImage
checkDirExists Various file utility functions used by ZooImage
checkEmptyDir Various file utility functions used by ZooImage
checkFileExists Various file utility functions used by ZooImage
checkFirstLine Various file utility functions used by ZooImage
closeAssistant The ZooImage GUI (Graphical User Interface)
closeZooImage The ZooImage GUI (Graphical User Interface)
collectTrain The ZooImage GUI (Graphical User Interface)
confusion.ZIClass Create and manipulate 'ZIClass' objects
createThreshold Various GUI utility functions used by ZooImage

-- D --

dropVars Various utility functions used by ZooImage

-- E --

ecd Various utility functions used by ZooImage
editDescription The ZooImage GUI (Graphical User Interface)
exitZI The ZooImage GUI (Graphical User Interface)
exportResults The ZooImage GUI (Graphical User Interface)
extensionPattern Various file utility functions used by ZooImage

-- F --

focusGraph The ZooImage GUI (Graphical User Interface)
focusR The ZooImage GUI (Graphical User Interface)
forceDirCreate Various file utility functions used by ZooImage

-- G --

getDec Various utility functions used by ZooImage
getTest Manipulate training and testsets 'ZITrain'/'ZITest' objects
getTrain Manipulate training and testsets 'ZITrain'/'ZITest' objects

-- H --

hasExtension Various file utility functions used by ZooImage

-- I --

imageViewer Various GUI utility functions used by ZooImage
importImg The ZooImage GUI (Graphical User Interface)
isZim Manipulate .zim files (ZooImage Metadata/Measurements)

-- J --

jpgList Various file utility functions used by ZooImage

-- L --

listFilesExt Various file utility functions used by ZooImage
listObjects The ZooImage GUI (Graphical User Interface)
listSamples Various utility functions used by ZooImage
loadObjects The ZooImage GUI (Graphical User Interface)

-- M --

makeClass The ZooImage GUI (Graphical User Interface)
makeId Various utility functions used by ZooImage
makeTrain The ZooImage GUI (Graphical User Interface)
makeZid The ZooImage GUI (Graphical User Interface)
modalAssistant Various GUI utility functions used by ZooImage

-- N --

noExtension Various file utility functions used by ZooImage

-- O --

optInOutDecimalSep The ZooImage GUI (Graphical User Interface)

-- P --

parseIni Various utility functions used by ZooImage
pngList Various file utility functions used by ZooImage
predict.ZIClass Create and manipulate 'ZIClass' objects
prepareTest Manipulate training and testsets 'ZITrain'/'ZITest' objects
prepareTrain Manipulate training and testsets 'ZITrain'/'ZITest' objects
print.ZIClass Create and manipulate 'ZIClass' objects
print.ZIE ZIE (ZooImage Extension) manipulate .zie files to add custom import, export, etc. routines to ZooImage
print.ZIRes Various function to calculate results ('ZIRes' object)
processImg The ZooImage GUI (Graphical User Interface)
processSample Various function to calculate results ('ZIRes' object)
processSampleAll Various function to calculate results ('ZIRes' object)
processSamples The ZooImage GUI (Graphical User Interface)

-- R --

rbind.ZIRes Various function to calculate results ('ZIRes' object)
recode Manipulate training and testsets 'ZITrain'/'ZITest' objects
recode.ZITest Manipulate training and testsets 'ZITrain'/'ZITest' objects
recode.ZITrain Manipulate training and testsets 'ZITrain'/'ZITest' objects
removeObjects The ZooImage GUI (Graphical User Interface)

-- S --

sampleInfo Various utility functions used by ZooImage
saveObjects The ZooImage GUI (Graphical User Interface)
selectFile Various GUI utility functions used by ZooImage
selectGroups Various GUI utility functions used by ZooImage
selectList Various GUI utility functions used by ZooImage
selectObject Various GUI utility functions used by ZooImage
startPgm Various GUI utility functions used by ZooImage
summary.ZIClass Create and manipulate 'ZIClass' objects

-- T --

template Manipulate training and testsets 'ZITrain'/'ZITest' objects
template.default Manipulate training and testsets 'ZITrain'/'ZITest' objects
trimString Various utility functions used by ZooImage

-- U --

underscoreToSpace Various utility functions used by ZooImage
unzipImg Zip and unzip raw .tif images for ZooImage and embed metadata
unzipImgAll Zip and unzip raw .tif images for ZooImage and embed metadata

-- V --

viewManual The ZooImage GUI (Graphical User Interface)
viewResults The ZooImage GUI (Graphical User Interface)
vignettesClass The ZooImage GUI (Graphical User Interface)

-- Z --

zicCheck Check .zic files (ZooImage Categories)
ZIClass Create and manipulate 'ZIClass' objects
zidbDatRead Manage .zidb files (ZooImage Databases)
zidbDrawVignette Manage .zidb files (ZooImage Databases)
zidbLink Manage .zidb files (ZooImage Databases)
zidbList Various file utility functions used by ZooImage
zidbMake Manage .zidb files (ZooImage Databases)
zidbMakeAll Manage .zidb files (ZooImage Databases)
zidbPlotNew Manage .zidb files (ZooImage Databases)
zidbSampleRead Manage .zidb files (ZooImage Databases)
zidbToZid Manage .zidb files (ZooImage Databases)
zidbToZidAll Manage .zidb files (ZooImage Databases)
zidClean Manage .zid files (ZooImage Data)
zidCompress Manage .zid files (ZooImage Data)
zidCompressAll Manage .zid files (ZooImage Data)
zidDatMake Manage .zid files (ZooImage Data)
zidDatRead Manage .zid files (ZooImage Data)
ZIDlg The ZooImage GUI (Graphical User Interface)
zidList Various file utility functions used by ZooImage
zidToZidb Manage .zidb files (ZooImage Databases)
zidToZidbAll Manage .zidb files (ZooImage Databases)
zidUncompress Manage .zid files (ZooImage Data)
zidUncompressAll Manage .zid files (ZooImage Data)
zidVerify Manage .zid files (ZooImage Data)
zidVerifyAll Manage .zid files (ZooImage Data)
ZIE ZIE (ZooImage Extension) manipulate .zie files to add custom import, export, etc. routines to ZooImage
zieCompile ZIE (ZooImage Extension) manipulate .zie files to add custom import, export, etc. routines to ZooImage
zieCompileFlowCAM ZIE (ZooImage Extension) manipulate .zie files to add custom import, export, etc. routines to ZooImage
zieMake ZIE (ZooImage Extension) manipulate .zie files to add custom import, export, etc. routines to ZooImage
zimCreate Manipulate .zim files (ZooImage Metadata/Measurements)
zimDatList Various file utility functions used by ZooImage
zimDatMakeFlowCAM Manipulate .zim files (ZooImage Metadata/Measurements)
zimDatMakeFlowCAMAll Manipulate .zim files (ZooImage Metadata/Measurements)
zimEdit Manipulate .zim files (ZooImage Metadata/Measurements)
zimExtractAll Manipulate .zim files (ZooImage Metadata/Measurements)
zimList Various file utility functions used by ZooImage
zimMake Manipulate .zim files (ZooImage Metadata/Measurements)
zimUpdateAll Manipulate .zim files (ZooImage Metadata/Measurements)
zimVerify Manipulate .zim files (ZooImage Metadata/Measurements)
zipImg Zip and unzip raw .tif images for ZooImage and embed metadata
zipImgAll Zip and unzip raw .tif images for ZooImage and embed metadata
zipList Various file utility functions used by ZooImage
zipNoteAdd Various utility functions used by ZooImage
zipNoteGet Various utility functions used by ZooImage
zisCreate Manipulate .zis files (ZooImage Samples description)
zisEdit Manipulate .zis files (ZooImage Samples description)
zisRead Manipulate .zis files (ZooImage Samples description)
zooimage ZooImage: analysis of digital plankton images