accessionToTaxa | Convert accessions to taxa |
condenseTaxa | Condense a taxa table for a single read |
getAccession2taxid | Download accession2taxid files from NCBI |
getId | Find a given taxa by name |
getNamesAndNodes | Download names and nodes files from NCBI |
getTaxonomy | Get taxonomic ranks for a taxa |
lastNotNa | Return last not NA value |
read.accession2taxid | Read NCBI accession2taxid files |
read.names | Read NCBI names file |
read.nodes | Read NCBI nodes file |
streamingRead | Process a large file piecewise |
trimTaxa | Trim columns from taxa file |