enaR-package |
Tools for Ecological Network Analysis (ena) |
as.bipartite |
Converts a network object (unipartite) to a two-mode (bipartite) network representation. |
as.extended |
Create an Extended Format Matrix |
bal |
Balancing by Either Inputs or Outputs |
balance |
Balance Flow Network Models |
bcratio |
Calculates the Ratio of Positive to Negative Elements in a Network |
bgcModels |
Bigeochemical Cycling Models |
cycliv |
Analysis of Feeding Cycles in a Network |
EcoNetWeb |
Access example EcoNet models from the EcoNet website. |
eigenCentrality |
the Eigen Centrality of a Network |
enaAll |
Conduct All Major ENA |
enaAscendency |
Calculates the Ascendency of an Ecological Network |
enaControl |
Control Analyses of Ecological Networks |
enaCycle |
Full Cycle Analysis of Ecological Networks |
enaEnviron |
Ecological Network Environs |
enaFlow |
Analyses of Ecological Networks |
enaModelInfo |
Ecosystem Model Information |
enaModels |
Ecosystem Models |
enaMTI |
Mixed Trophic Impacts (MTI) Analysis |
enaR |
Tools for Ecological Network Analysis (ena) |
enaStorage |
Storage Analyses of Ecological Networks |
enaStructure |
Structure Analyses of Ecological Network |
enaTroAgg |
Trophic Aggregations (TroAgg) Analysis |
enaUncertainty |
Produce a set of plausible network models |
enaUtility |
Utility Analysis of Ecological Networks |
environCentrality |
Environ Centrality an Ecological Network |
findPathLength |
Cumulative Flow over a Range of Path Lengths |
force.balance |
Repeated Application the Balance Function |
get.ns |
Quick Calculation of a Range of Network Statistics. |
get.orient |
Returns the global orientation |
m.list |
Sub-set of the Larger Ecosystem Models |
meanTrophicLevel |
meanTrophicLevel INPUT = network data object, min trophic level choice OUTPUT = mean trophic level |
mExp |
Calculate the exponent of a given matrix |
netOrder |
Reorder Nodes in a Network in enaR |
oyster |
Intertidal Oyster Reef Ecosystem Model |
pack |
Compile Network Information into a Network Class |
read.EcoNet |
Read an EcoNet model. |
read.enam |
R function to read in a matrix formatted as Mdloti (Ursula Sharler) |
read.nea |
Read an NEA formatted model into a network object |
read.scor |
SCOR formatted file into R in multiple formats INPUT = file path |
read.wand |
WAND formatted file into R |
relationalChange |
Relational change compared between two matrices. |
scc |
Find the strongly connected component |
scifix |
scifix Corrects missing e or E in scientific notation |
set.orient |
Globally reorients matrices |
ShannonDiversity |
ShannonDiversity Shannon Diversity Metrics |
signs |
Signs and summary of input matrix |
ssCheck |
Checks if the given network is out of balance by a given tolerance threshold |
structure.statistics |
structural statistics |
TES |
Calculates the Total Environ Storage |
TET |
Calculate the Total Environ Throughflow |
troModels |
Trophic Models |
unpack |
Extracts network object into a list |
write.EcoNet |
Write enaR models to an EcoNet formatted file. |
write.nea |
Create a formatted file with data arranged as expected input for NEA.m |