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| boral-package | Bayesian Ordination and Regression AnaLysis (boral) |
| about.distributions | Distributions available in boral |
| about.ssvs | Stochastic search variable selection (SSVS) in boral |
| about.traits | Including species traits in boral |
| boral | Fitting boral (Bayesian Ordination and Regression AnaLysis) models |
| boral.default | Fitting boral (Bayesian Ordination and Regression AnaLysis) models |
| calc.condlogLik | Conditional log-likelihood for a boral model |
| calc.logLik.lv0 | Log-likelihood for a boral model with no latent variables |
| calc.marglogLik | Marginal log-likelihood for an boral model |
| calc.varpart | Variance partitioning for a boral model |
| coefsplot | Caterpillar plots of the regression coefficients from a boral model |
| create.life | Simulate a Multivariate Response Matrix |
| ds.residuals | Dunn-Smyth Residuals for a boral model |
| fitted.boral | Extract Model Fitted Values for an boral object |
| get.dic | Extract Deviance Information Criterion for boral model |
| get.enviro.cor | Extract covariances and correlations due to shared environmental responses from boral models |
| get.hpdintervals | Highest posterior density intervals for an boral model |
| get.mcmcsamples | Extract MCMC samples from boral models |
| get.measures | Information Criteria for boral models |
| get.more.measures | Additional Information Criteria for boral models |
| get.residual.cor | Extract residual correlations and precisions from boral models |
| lvsplot | Plot the latent variables from an boral model |
| make.jagsboralmodel | Write a text file containing an boral model for use into JAGS |
| make.jagsboralnullmodel | Write a text file containing an boral model for use into JAGS |
| plot.boral | Plots of a fitted boral object |
| predict.boral | Predict using a boral model |
| print.boral | Fitting boral (Bayesian Ordination and Regression AnaLysis) models |
| print.summary.boral | Summary of fitted boral object |
| simulate.boral | Simulate a Multivariate Response Matrix |
| summary.boral | Summary of fitted boral object |