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| aldous.test | Visualizing balance via scatter diagrams |
| all.equal.treeshape | Compare two objects of class treeshape |
| as.phylo.treeshape | Conversion among tree objects |
| as.treeshape | Conversion among tree objects |
| as.treeshape.phylo | Conversion among tree objects |
| carnivora.treeshape | Phylogeny of carnivores. |
| cladesize | Compute the number of children of a randomly chosen node |
| colless | Compute the Colless' shape statistic on tree data |
| colless.test | Perform a test on the Yule or PDA hypothesis based on the Colless or the Sackin statistic |
| cutreeshape | Cut objects of class "treeshape" |
| cytochromc | Phylogeny of the cytochrome C family. |
| hivtree.treeshape | Phylogenetic Tree of 193 HIV-1 Sequences |
| likelihood.test | Test the Yule model vs PDA (uniform) model. |
| maxlik.betasplit | Maximum likelihood of beta in the Beta-splitting model |
| plot.treeshape | Plot phylogenetic treeshapes. |
| primates | Phylogeny of the primates. |
| rhodopsin | Phylogeny of rhodopsin proteins. |
| rtreeshape | Generate a list of random binary trees according to a given model |
| sackin | Compute the Sackin's index of a tree |
| sackin.test | Perform a test on the Yule or PDA hypothesis based on the Colless or the Sackin statistic |
| shape.statistic | Computes the log of the likelihood ratio (yule/pda) |
| shift.test | Testing diversification rate variation in phylogenetic trees |
| smaller.clade.spectrum | Compute the smaller clade spectrum of a tree. |
| spectrum.treeshape | Compute the spectrum of a tree |
| subtree.test | Test the Yule or PDA hypothesis |
| summary.treeshape | Print a summary of an object of class "treeshape" |
| tipsubtree | Extract a subtree that contains pre-specified tip names or labels |
| treeshape | Builds an object of class treeshape |
| universal.treeshape | Universal phylogenetic tree of life |