RNA Secondary Structure Module Mining, Comparison and Plotting

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Documentation for package ‘RNAsmc’ version 0.1.0

Help Pages

bulgeLoopsPlot A function for bulge loops plotting
bulge_loop Internal function for getting bulge loops in a RNA secondary structure
compare compare
ct2dot ct2dot
DataCluster1 A RNA secondary structure file containing structure information
DataCluster2 A RNA secondary structure file containing structure information
DataCluster3 A RNA secondary structure file containing structure information
DataCluster4 A RNA secondary structure file containing structure information
DataCompareStr1 A RNA secondary structure file containing structure information
DataCompareStr2 A RNA secondary structure file containing structure information
DataRNAstr A RNA secondary structure file containing structure information
hairpinLoopsPlot A function for hairpin loops plotting
hairpin_loop Internal function for getting hairpin loops
internalLoopsPlot A function for internal loops plotting
internal_loop Internal function for getting internal loops
multiBranchLoopsPlot A function for multi-branch loops plotting
multi_branch_loop Internal function for getting multi-branch loops
RNAstrCluster A function for RNAs clustering by their structure similarites
RNAstrPlot A function for whole RNA secondary structure plotting
stem Internal function for getting stems
stemPlot A function for stems plotting