backwardSearch | Backward Search Function |
calculateROC | Calculate ROC Curve Statistics |
calculateScore | Calculate a signature Z-score for a set of genes in a single dataset |
checkDataObject | Check for errors in objects used for analysis |
ens_ensgID_table | ENSEMBL gene id table cache |
ens_entrez_table | ENSEMBL entrez table cache |
filterGenes | Filter out significant genes from meta-analysis results |
forestPlot | Compare effect sizes of a gene across all datasets in meta-analysis |
forwardSearch | Forward Search Function |
getGEOData | GEO download/processing through GEOquery |
getMostRecentFilter | Get name of most recent filter |
getSampleLevelGeneData | Extract gene-level data from a given data object |
heatmapPlot | Generates a heatmap with effect sizes for all genes which pass a filter in all measured diseases |
MetaIntegrator | MetaIntegrator package for meta-analysis of gene expression data |
regressionPlot | Generate a plot which draws a regrssion line between the Meta Score and a continuous variable phenotype. |
rocPlot | Plot ROC Curve for a Dataset |
runMetaAnalysis | Run the meta-analysis algorithm |
summarizeFilterResults | Summarize the filtered analysis results |
tinyMetaObject | A Tiny MetaObject |
ucsc_genbank_table | UCSC genbank table cache |
ucsc_refseq_table | UCSC refseq table cache |
violinPlot | Compare groups within a single dataset in a violin plot |