Latent Environmental & Genetic InTeraction (LEGIT) Model


[Up] [Top]

Documentation for package ‘LEGIT’ version 1.2.0

Help Pages

bootstrap_var_select Bootstrap variable selection (for IMLEGIT)
example_2way Simulated example of a 2 way interaction GxE model.
example_3way Simulated example of a 3 way interaction GxExz model
example_3way_3latent Simulated example of a 3 way interaction GxExZ model
example_with_crossover Simulated example of a 2 way interaction GxE model with crossover point.
genetic_var_select Parallel genetic algorithm variable selection (for IMLEGIT)
GxE_interaction_RoS Regions of significance using Johnson-Neyman technique
GxE_interaction_test Testing of the GxE interaction
IMLEGIT Independent Multiple Latent Environmental & Genetic InTeraction (IMLEGIT) model
IMLEGIT_cv Cross-validation for the IMLEGIT model
LEGIT Latent Environmental & Genetic InTeraction (LEGIT) model
LEGIT_cv Cross-validation for the LEGIT model
longitudinal_folds Longitudinal folds
nes_var_select Parallel natural evolutionary variable selection (nes) (for IMLEGIT)
plot.LEGIT Plot
predict.IMLEGIT Predictions of IMLEGIT fits
predict.LEGIT Predictions of LEGIT fits
rGE Gene-Environment correlation estimation and testing
rGE.IMLEGIT Gene-Environment correlation estimation and testing of IMLEGIT models
rGE.LEGIT Gene-Environment correlation estimation and testing of LEGIT models
stepwise_search Stepwise search for the best subset of genetic variants or environments with the LEGIT model
stepwise_search_IM Stepwise search for the best subset of elements in the latent variables with the IMLEGIT model
summary.IMLEGIT Summarizing IMLEGIT fits
summary.LEGIT Summarizing LEGIT fits