Signature Overrepresentation Analysis

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Documentation for package ‘sigora’ version 2.0.1

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sigora-package SIGNATURE OVERREPRESENTATION ANALYSIS
genesFromRandomPathways Function to randomly select genes associated with randomly pathways.
getGenes List genes involved in present GPS for a specific pathway in the summary_results
idmap Identifier mappings for protein coding genes.
kegH Pathway GPS data, extracted from KEGG repository (Human).
kegM Pathway GPS data, extracted from KEGG repository (Mouse).
makeGPS Create your own Signature Object.
nciTable NCI human gene-pathway associations.
ora Traditional Overrepresentation Analysis.
reaH Pathway GPS data, extracted from the Reactome repository (Human).
reaM Pathway GPS data, extracted from Reactome repository (Mouse).
sigora Sigora's main function.