Generalized Survival Models


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Documentation for package ‘rstpm2’ version 1.4.1

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Rstpm2-package Flexible parametric survival models.
aft Parametric accelerated failure time model with smooth time functions
aft-class Class "stpm2" ~~~
AIC-method Class "pstpm2"
AICc-method Class "pstpm2"
anova-method Class "pstpm2"
BIC-method Class "pstpm2"
brcancer German breast cancer data from Stata.
coef<- Generic method to update the coef in an object.
colon Colon cancer.
cox.tvc Test for a time-varying effect in the 'coxph' model
grad gradient function (internal function)
incrVar Utility that returns a function to increment a variable in a data-frame.
legendre.quadrature.rule.200 Legendre quadrature rule for n=200.
lhs Internal functions for the rstpm2 package.
lhs<- Internal functions for the rstpm2 package.
nsx Generate a Basis Matrix for Natural Cubic Splines (with eXtensions)
nsxD Generate a Basis Matrix for the first derivative of Natural Cubic Splines (with eXtensions)
numDeltaMethod Calculate numerical delta method for non-linear predictions.
plot-method Class "stpm2" ~~~
plot-method plots for an stpm2 fit
plot-method Class "pstpm2"
plot-method Class "stpm2" ~~~
plot-method Class '"tvcCoxph"'
plot-methods plots for an stpm2 fit
popmort Background mortality rates for the colon dataset.
predict-method Class "stpm2" ~~~
predict-method Predicted values for an stpm2 or pstpm2 fit
predict-methods Predicted values for an stpm2 or pstpm2 fit
predict.nsx Evaluate a Spline Basis
predictnl Generic function for non-linear prediction.
predictnl-method Class "stpm2" ~~~
predictnl-method ~~ Methods for Function predictnl ~~
predictnl-method Class "pstpm2"
predictnl-method Class "stpm2" ~~~
predictnl-methods ~~ Methods for Function predictnl ~~
predictnl.default Default implementation of the 'predictnl' generic function.
pstpm2 Penalised generalised survival model
pstpm2-class Class "pstpm2"
qAICc-method Class "pstpm2"
residuals-method Residual values for an stpm2 or pstpm2 fit
residuals-methods Residual values for an stpm2 or pstpm2 fit
rhs Internal functions for the rstpm2 package.
rhs<- Internal functions for the rstpm2 package.
Rstpm2 Flexible parametric survival models.
stpm2 Fully parametric generalised survival model
stpm2-class Class "stpm2" ~~~
summary-method Class "pstpm2"
summary-method Class "stpm2" ~~~
tvcCoxph-class Class '"tvcCoxph"'