Dendrograms for Evolutionary Analysis


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Documentation for package ‘phylogram’ version 1.0.1

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phylogram-package Dendrograms for evolutionary analysis.
kcount K-mer counting.
kdistance K-mer distance matrix computation.
ladder Reorder tree branches in ladderized pattern.
mbed Convert sequences to vectors of distances to a subset of seed sequences.
phylogram Dendrograms for evolutionary analysis.
print.mbed Print summary methods.
prune Remove tree nodes by regular expression pattern matching.
read.dendrogram Read a dendrogram from parenthetic text.
remidpoint Set dendrogram attributes for a nested list.
reposition Reset dendrogram height attributes.
topdown Top down (divisive) tree-building.
ultrametricize Make dendrogram ultrametric.
write.dendrogram Export a dendrogram object to text.