phylogram-package |
Dendrograms for evolutionary analysis. |
kcount |
K-mer counting. |
kdistance |
K-mer distance matrix computation. |
ladder |
Reorder tree branches in ladderized pattern. |
mbed |
Convert sequences to vectors of distances to a subset of seed sequences. |
phylogram |
Dendrograms for evolutionary analysis. |
print.mbed |
Print summary methods. |
prune |
Remove tree nodes by regular expression pattern matching. |
read.dendrogram |
Read a dendrogram from parenthetic text. |
remidpoint |
Set dendrogram attributes for a nested list. |
reposition |
Reset dendrogram height attributes. |
topdown |
Top down (divisive) tree-building. |
ultrametricize |
Make dendrogram ultrametric. |
write.dendrogram |
Export a dendrogram object to text. |