Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data


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Documentation for package ‘mvMORPH’ version 1.0.9

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mvMORPH-package Multivariate Comparative Methods for Fitting Evolutionary Models to Morphometric Data
aicw Akaike weights
estim Ancestral states reconstructions and missing value imputation with phylogenetic/time-series models
halflife The phylogenetic half-life for an Ornstein-Uhlenbeck process
LRT Likelihood Ratio Test
mv.Precalc Model parameterization for the various mvMORPH functions
mvBM Multivariate Brownian Motion models of continuous traits evolution
mvEB Multivariate Early Burst model of continuous traits evolution
mvLL Multivariate (and univariate) algorithms for log-likelihood estimation of arbitrary covariance matrix/trees
mvMORPH Multivariate Comparative Methods for Fitting Evolutionary Models to Morphometric Data
mvOU Multivariate Ornstein-Uhlenbeck model of continuous traits evolution
mvOUTS Multivariate continuous trait evolution for a stationary time series (Ornstein-Uhlenbeck model)
mvRWTS Multivariate Brownian motion / Random Walk model of continuous traits evolution on time series
mvSHIFT Multivariate change in mode of continuous trait evolution
mvSIM Simulation of (multivariate) continuous traits on a phylogeny
pruning Pruning algorithm to compute the square root of the phylogenetic covariance matrix and it's determinant.
stationary The stationary variance of an Ornstein-Uhlenbeck process