AIC.momentuHMM | AIC |
allProbs | Matrix of all probabilities |
CIbeta | Confidence intervals for working (i.e., beta) parameters |
circAngles | Convert standard direction angles (in radians relative to the x-axis) to turning angle covariates suitable for circular-circular regression on the angle mean |
CIreal | Confidence intervals for the natural (i.e., real) parameters |
crawlMerge | Merge crwData object with additional data streams and/or covariates |
crawlWrap | Fit and predict tracks for using crawl |
crwData | Constructor of 'crwData' objects |
crwSim | Constructor of 'crwSim' objects |
dbern_rcpp | Bernoulli density function |
dbeta_rcpp | Probability density function of the beta distribution (written in C++) |
dexp_rcpp | Exponential density function |
dgamma_rcpp | Gamma density function |
distAngle | Calculate distance between points y and z and turning angle between points x, y, and z |
dlnorm_rcpp | Log-normal density function |
dnorm_rcpp | Normal density function |
dpois_rcpp | Poisson density function |
dvm_rcpp | Von Mises density function |
dweibull_rcpp | Weibull density function |
dwrpcauchy_rcpp | Wrapped Cauchy density function |
example | Example dataset |
exGen | Example data simulation |
fitHMM | Fit a multivariate HMM to the data |
forest | Example dataset |
getCovNames | Get names of any covariates used in probability distribution parameters |
getDM_rcpp | Get design matrix |
getPar | Get starting values from momentuHMM, miHMM, or miSum object returned by fitHMM, MIfitHMM, or MIpool |
getPar0 | Get starting values for new model from existing 'momentuHMM' model fit |
getParDM | Get starting values on working scale based on design matrix and other parameter constraints |
is.crwData | Is crwData |
is.crwSim | Is crwSim |
is.miHMM | Is miHMM |
is.miSum | Is miSum |
is.momentuHMM | Is momentuHMM |
is.momentuHMMData | Is momentuHMMData |
logAlpha | Forward log-probabilities |
logBeta | Backward log-probabilities |
miExample | Example dataset |
MIfitHMM | Fit HMMs to multiple imputation data |
miHMM | Constructor of 'miHMM' objects |
MIpool | Calculate pooled parameter estimates and states across multiple imputations |
miSum | Constructor of 'miSum' objects |
momentuHMM | Constructor of 'momentuHMM' objects |
momentuHMMData | Constructor of 'momentuHMMData' objects |
n2w | Scaling function: natural to working parameters. |
nLogLike | Negative log-likelihood function |
nLogLike_rcpp | Negative log-likelihood |
parDef | Parameters definition |
plot.crwData | Plot 'crwData' |
plot.miHMM | Plot 'miHMM' |
plot.miSum | Plot 'miSum' |
plot.momentuHMM | Plot 'momentuHMM' |
plot.momentuHMMData | Plot 'momentuHMMData' |
plotPR | Plot pseudo-residuals |
plotSat | Plot observations on satellite image |
plotSpatialCov | Plot observations on raster image |
plotStates | Plot states |
prepData | Preprocessing of the data streams and covariates |
print.miHMM | Print 'miHMM' |
print.miSum | Print 'miSum' |
print.momentuHMM | Print 'momentuHMM' |
pseudoRes | Pseudo-residuals |
simData | Simulation tool |
simObsData | Observation error simulation tool |
stateProbs | State probabilities |
trMatrix_rcpp | Transition probability matrix |
turnAngle | Turning angle |
viterbi | Viterbi algorithm |
w2n | Scaling function: working to natural parameters |
XBloop_rcpp | Get XB |