Information Retrieval for Genetic Datasets

Documentation for package ‘hoardeR’ version 0.1

R/hoardeR-package	Collect and Retrieve Annotation Data for Various Genetic Data.
blastSeq	Sending Genomic Sequences to NCBI Blast service
getAssemblies	Extracting Assemblies.
getEnsgInfo	Retrieve Gene Information From The NCBI Database.
getGeneLocation	Extracting Gene Locations.
getGeneSeq	Extracting a gene sequence from NCBI database.
importBlastTab	Import a Tab Delimited Blast Output File
importFA	Importing a Fasta File.
importGFF3	Import a GFF3 File
importGTF	Import a GTF File
importPedMap	Import a ped/map File Pair
importXML	Import a XML File
print-method	Print an ensgInfo Object
print-method	Print an fa Object
print-method	Print an pedMap Object
print-method	Print an xmlImport Object
print.ensgInfo	Print an ensgInfo Object
print.fa	Print an fa Object
print.pedMap	Print an pedMap Object
print.xmlImport	Print an xmlImport Object
species	Species Name for Blast Search
speciesFigure	Showing Quantities of Different Species.
subDose	Rewrite the Dose File from a Beagle Output
subGprobs	Rewrite the Gprobs File from a Beagle Output
subPhased	Rewrite the Phased File from a Beagle Output
summary-method	Summarize an ensgInfo Object
summary-method	Summarize an fa Object
summary-method	Summarize an pedMap Object
summary.ensgInfo	Summarize an ensgInfo Object
summary.fa	Summarize an fa Object
summary.pedMap	Summarize an pedMap Object