General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction


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Documentation for package ‘frailtypack’ version 2.12.6

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frailtypack-package General Frailty models: shared, joint and nested frailty models with prediction
additivePenal Fit an Additive Frailty model using a semiparametric penalized likelihood estimation or a parametric estimation
bcos Breast Cosmesis Data
CbootstrapFP Concordance measures in shared frailty and Cox proportional hazard models
cindexes Concordance measures in shared frailty and Cox proportional hazard models
cindexes.B Concordance measures in shared frailty and Cox proportional hazard models
cindexes.frailty Concordance measures in shared frailty and Cox proportional hazard models
cindexes.W Concordance measures in shared frailty and Cox proportional hazard models
cluster Identify clusters
Cmeasures Concordance measures in shared frailty and Cox proportional hazard models
colorectal Follow-up of metastatic colorectal cancer patients: times of new lesions appearance and death
colorectalLongi Follow-up of metastatic colorectal cancer patients : longitudinal measurements of tumor size
dataAdditive Simulated data as a gathering of clinical trials databases
dataMultiv Simulated data for two types of recurrent events and a terminal event
dataNested Simulated data with two levels of grouping
Diffepoce Difference of Expected Prognostic Observed Cross-Entropy (EPOCE) estimators and its 95% tracking interval between two joint models.
epoce Estimators of the Expected Prognostic Observed Cross-Entropy (EPOCE) for evaluating predictive accuracy of joint models.
event2 Identify event2 indicator
factor.names Fit a Shared, Joint or Nested Frailty model
frailtypack General Frailty models: shared, joint and nested frailty models with prediction
frailtyPenal Fit a Shared, Joint or Nested Frailty model
hazard Hazard function.
lines.additivePenal Plot Method for an Additive frailty model.
lines.frailtyPenal Plot Method for a Shared frailty model.
lines.jointNestedPenal Plot method for a joint nested frailty model.
lines.jointPenal Plot Method for a Joint frailty model.
lines.longiPenal Plot Method for a joint model for longitudinal data and a terminal event.
lines.nestedPenal Plot Method for a Nested frailty model.
lines.trivPenal Plot Method for a trivariate joint model for longitudinal data, recurrent events and a terminal event.
lines.trivPenalNL Plot Method for a Non-Linear Trivariate Joint Model for Recurrent Events and a Terminal Event with a Biomarker Described with an ODE.
longiPenal Fit a Joint Model for Longitudinal Data and a Terminal Event
multivPenal Fit a multivariate frailty model for two types of recurrent events and a terminal event.
multivPenal for multivariate frailty model Fit a multivariate frailty model for two types of recurrent events and a terminal event.
num.id Identify individuals in Joint model for clustered data
plot.additivePenal Plot Method for an Additive frailty model.
plot.Diffepoce Plot difference of EPOCE estimators between two joint frailty models.
plot.epoce Plot values of estimators of the Expected Prognostic Observed Cross-Entropy (EPOCE).
plot.frailtyPenal Plot Method for a Shared frailty model.
plot.jointNestedPenal Plot method for a joint nested frailty model.
plot.jointPenal Plot Method for a Joint frailty model.
plot.longiPenal Plot Method for a joint model for longitudinal data and a terminal event.
plot.multivPenal Plot Method for a multivariate frailty model.
plot.nestedPenal Plot Method for a Nested frailty model.
plot.predFrailty Plot predictions using a Cox or a shared frailty model.
plot.predJoint Plot predictions using a joint frailty model.
plot.predLongi Plot predictions using a joint model for longitudinal data and a terminal event or a trivariate joint model for longitudinal data, recurrent events and a terminal event.
plot.trivPenal Plot Method for a trivariate joint model for longitudinal data, recurrent events and a terminal event.
plot.trivPenalNL Plot Method for a Non-Linear Trivariate Joint Model for Recurrent Events and a Terminal Event with a Biomarker Described with an ODE.
prediction Prediction probabilities for Cox proportional hazard, Shared, Joint frailty models, Joint models for longitudinal data and a terminal event and Trivariate joint model for longitudinal data, recurrent events and a terminal event (linear and non-linear).
print.additivePenal Print a Short Summary of parameter estimates of an additive frailty model
print.Cmeasures Print a short summary of results of Cmeasure function.
print.frailtyPenal Print a Short Summary of parameter estimates of a shared frailty model
print.jointNestedPenal Print a Short Summary of parameter estimates of a joint nested frailty model
print.jointPenal Print a Short Summary of parameter estimates of a joint frailty model
print.longiPenal Print a Summary of parameter estimates of a joint model for longitudinal data and a terminal event
print.multivPenal Print a Short Summary of parameter estimates of a multivariate frailty model
print.nestedPenal Print a Short Summary of parameter estimates of a nested frailty model
print.predFrailty Print a short summary of results of prediction function.
print.predJoint Print a short summary of results of prediction function.
print.predLongi Print a short summary of results of prediction function.
print.summary.additivePenal summary of parameter estimates of an additive frailty model
print.summary.frailtyPenal summary of parameter estimates of a shared frailty model
print.summary.jointNestedPenal summary of parameter estimates of a joint nested frailty model
print.summary.jointPenal summary of parameter estimates of a joint frailty model
print.summary.longiPenal Short summary of fixed covariates estimates of a joint model for longitudinal data and a terminal event
print.summary.nestedPenal summary of regression coefficient estimates of a nested frailty model
print.summary.trivPenal Short summary of fixed covariates estimates of a joint model for longitudinal data, recurrent events and a terminal event
print.summary.trivPenalNL Short summary of fixed covariates estimates of a non-linear trivariate joint model for longitudinal data, recurrent events and a terminal event
print.trivPenal Print a Summary of parameter estimates of a joint model for longitudinal data, recurrent events and a terminal event
print.trivPenalNL Print a Summary of parameter estimates of a non-linear trivariate joint model for longitudinal data, recurrent events and a terminal event
readmission Rehospitalization colorectal cancer
slope Identify variable associated with the random slope
statFP Concordance measures in shared frailty and Cox proportional hazard models
subcluster Identify subclusters
summary.additivePenal summary of parameter estimates of an additive frailty model
summary.frailtyPenal summary of parameter estimates of a shared frailty model
summary.jointNestedPenal summary of parameter estimates of a joint nested frailty model
summary.jointPenal summary of parameter estimates of a joint frailty model
summary.longiPenal Short summary of fixed covariates estimates of a joint model for longitudinal data and a terminal event
summary.multivPenal summary of parameter estimates of a multivariate frailty model.
summary.nestedPenal summary of regression coefficient estimates of a nested frailty model
summary.trivPenal Short summary of fixed covariates estimates of a joint model for longitudinal data, recurrent events and a terminal event
summary.trivPenalNL Short summary of fixed covariates estimates of a non-linear trivariate joint model for longitudinal data, recurrent events and a terminal event
SurvIC Create a survival object for interval censoring and possibly left truncated data
survival Survival function
terminal Identify terminal indicator
timedep Identify time-varying effects
timedep.names Fit a Shared, Joint or Nested Frailty model
transfo.table Fit a multivariate frailty model for two types of recurrent events and a terminal event.
trivPenal Fit a Trivariate Joint Model for Longitudinal Data, Recurrent Events and a Terminal Event
trivPenalNL Fit a Non-Linear Trivariate Joint Model for Recurrent Events and a Terminal Event with a Biomarker Described with an ODE Population Model
waldtest Fit a Shared, Joint or Nested Frailty model