Differential Expression Analysis Using a Bottom-Up Model


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Documentation for package ‘denoiSeq’ version 0.1.0

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denoiseq Differential expression analysis using a bottom-up model
ERCC ERCC dataset
getSamplesOf Get posterior samples of a parameter
readsData An S4 class to represent summarised counts and the output of Bayesian inference.
results Compute the test statistic
setInitValues-method Mutator method for the initValues slot of the readsData object.
setOutput-method Mutator method for the output slot of the readsData object.
setReplicates-method Mutator method for the replicates slot of the readsData object.
setStepSizes-method Mutator method for the stepSizes slot of the readsData object.
simdat simulated data
tunedStepSize Get values of the tuned step sizes.