SimInf-package | A Framework for Stochastic Disease Spread Simulations |
boxplot | Box Plots |
boxplot-method | Box Plots |
boxplot-methods | Box Plots |
C_code | Extract the C code from an 'mparse' object |
C_code-method | Extract the C code from an 'mparse' object |
distance_matrix | Create distance matrix |
events | Extract the events from a 'SimInf_model' object |
events-method | Extract the events from a 'SimInf_model' object |
events_SEIR | Scheduled events example data for the 'SEIR' model |
events_SIR | Scheduled events example data for the 'SIR' model |
events_SISe | Scheduled events example data for the 'SISe' model |
events_SISe3 | Scheduled events example data |
infected | Infected |
infected-method | Infected |
init | Init a 'SimInf_mparse' object with data |
init-method | Init a 'SimInf_mparse' object with data |
mparse | Model parser |
nodes | Example data with spatial distribution of nodes |
package_skeleton | Describe your model in a logical way in R. 'mparse' creates a 'SimInf_mparse' object with your model definition that is ready to be initialised with data and then 'run'. Create a package skeleton for a model depending on SimInf |
package_skeleton-method | Describe your model in a logical way in R. 'mparse' creates a 'SimInf_mparse' object with your model definition that is ready to be initialised with data and then 'run'. Create a package skeleton for a model depending on SimInf |
pairs | Scatterplot Matrices |
pairs-method | Scatterplot Matrices |
pairs-methods | Scatterplot Matrices |
plot | Plot 'SimInf_events' |
plot-method | Plot 'SimInf_events' |
plot-methods | Plot 'SimInf_events' |
prevalence | Prevalence |
prevalence-method | Prevalence |
recovered | Recovered |
recovered-method | Recovered |
run | Run the SimInf stochastic simulation algorithm |
run-method | Run the SimInf stochastic simulation algorithm |
run_outer | Run 'SimInf_model' on scaled parameters |
run_outer-method | Run 'SimInf_model' on scaled parameters |
SEIR | Create a SEIR model |
SEIR-class | Class '"SEIR"' |
show,SimInf_events-methods | Brief summary of 'SimInf_events' |
show,SimInf_model-methods | Brief summary of 'SimInf_model' |
show-method | Brief summary of 'SimInf_events' |
show-method | Brief summary of 'SimInf_model' |
SimInf | A Framework for Stochastic Disease Spread Simulations |
SimInf_events | Create a '"SimInf_events"' object |
SimInf_events-class | Class '"SimInf_events"' |
SimInf_model | Create a 'SimInf_model' |
SimInf_model-class | Class '"SimInf_model"' |
SimInf_mparse-class | Class '"SimInf_mparse"' |
SIR | Create a SIR model |
SIR-class | Class '"SIR"' |
SISe | Create a SISe model |
SISe-class | Class '"SISe"' |
SISe3 | Create a SISe3 model |
SISe3-class | Class '"SISe3"' |
SISe3_sp | Create a SISe3_sp model |
SISe3_sp-class | Class '"SISe3_sp"' |
SISe_sp | Create a 'SISe_sp' model |
SISe_sp-class | Class '"SISe_sp"' |
summary,SimInf_events-methods | Summary of 'SimInf_events' |
summary,SimInf_model-methods | Summary of 'SimInf_model' |
summary-method | Summary of 'SimInf_events' |
summary-method | Summary of 'SimInf_model' |
susceptible | Susceptible |
susceptible-method | Susceptible |
U | Extract the number of individuals in each compartment |
U-method | Extract the number of individuals in each compartment |
u0_SEIR | Example data to initialize the 'SEIR' model |
u0_SIR | Example data to initialize the 'SIR' model |
u0_SISe | Example data to initialize the 'SISe' model |
u0_SISe3 | Example data to initialize a model |
U<- | Set a template for where to write the U result matrix |
U<--method | Set a template for where to write the U result matrix |
V | Extract the continuous state variables |
V-method | Extract the continuous state variables |
V<- | Set a template for where to write the V result matrix |
V<--method | Set a template for where to write the V result matrix |