SEER and Atomic Bomb Survivor Data Analysis Tools


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Documentation for package ‘SEERaBomb’ version 2017.2

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SEERaBomb-package SEER and A-Bomb Data Analysis Tools
csd Cancer risk vs years Since Diagnosis of other cancer
esd Event vs years Since Diagnosis
getDF Converts a seerSet$L series to a data.frame
getFields Get fields from SEER SAS file
mapCancs Map ICD9 and ICD-O3 codes to cancers
mapRegs Map registry codes to acronyms
mapTrts Map treatment codes to factor
mk2D Make 2D-spline fits of incidences
mkAbomb Make Abomb SQLite database
mkDemographics Make Demographics Tables
mkExcelCsd Make RR Excel file from csd output
mkSEER Make R binaries of SEER data.
mkSEERold Make SEER binaries as before
msd Mortality vs years Since Diagnosis
nvsr National Vital Statistic Report (nvsr) Data
nvsr01 National Vital Statistic Report (nvsr01) Data
pickFields Pick SEER fields of interest
plot2D Plot 2D cancer incidence splines
riskVsAge Second cancer risk vs attained age after first cancer
seerSet Join SEER cancers and PY
seerStats Summarize SEER data.
Sigurdson Chromosome translocation versus age data
simSeerSet Simulate SEER cancers and population person years
stdUS The standard population of the US in 2000
summary.seerSet Summary of seerSet object