Data Exchange Between R and LabKey Server


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Documentation for package ‘Rlabkey’ version 2.1.136

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Rlabkey-package Exchange data between LabKey Server and R
getFolderPath Reutrns the folder path associated with a session
getLookups Get related data fields that are available to include in a query on a given query object
getRows Retrieve data from LabKey Server
getSchema Returns an object representing a LabKey schema
getSession Creates and returns a LabKey Server session
labkey.acceptSelfSignedCerts Convenience method to configure Rlabkey connections to accept self-signed certificates
labkey.curlOptions Returns the current set of Curl options that are being used in the existing session
labkey.deleteRows Delete rows of data from a LabKey database
labkey.executeSql Retrieve data from a LabKey Server using SQL commands
labkey.getDefaultViewDetails Retrieve the fields of a LabKey query view
labkey.getFolders Retrieve a list of folders accessible to the current user
labkey.getLookupDetails Retrieve detailed information on a LabKey query
labkey.getQueries Retrieve a list of available queries for a specified LabKey schema
labkey.getQueryDetails Retrieve detailed information on a LabKey query
labkey.getQueryViews Retrieve a list of available named views defined on a query in a schema
labkey.getSchemas Retrieve a list of available schemas from a labkey database
labkey.importRows Import rows of data into a LabKey Server
labkey.insertRows Insert new rows of data into a LabKey Server
labkey.makeRemotePath Build a file path to data on a remote machine
labkey.saveBatch Save an assay batch object to a labkey database
labkey.selectRows Retrieve data from a labkey database
labkey.setCurlOptions Modify the current set of Curl options that are being used in the existing session
labkey.setDefaults Set the default parameters used for all http or https requests
labkey.updateRows Update existing rows of data in a labkey database
lsFolders List the available folder paths
lsProjects List the projects available at a given LabKey Server address
lsSchemas List the available schemas
makeFilter Builds filters to be used in labkey.selectRows and getRows
Rlabkey Exchange data between LabKey Server and R
RlabkeyUsersGuide Open the Rlabkey Users Guide
saveResults Returns an object representing a LabKey schema