Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms

Documentation for package ‘HiCglmi’ version 1.1

HiCglmi-package	Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms
annotateHiCBin	Annotate Hi-C bins with genomic feature data.
createHiCDataset	Create a dataset for further processing with the R package.
dataExample	Hi-C matrix and ChIP-seq peaks.
filterCouples	Filter Hi-C data based on knowledge.
HiCglmi	Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms
HiCglmiModel	The generalized linear model with interactions.
HiCglmiProcData	Process data for further generalized linear regression with interactions (GLMI).
readGFBed	Read genomic feature bed file
testDistancePowerLawDistrib	Check log-log linear relation between distance and Hi-C count.