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| corr | corr |
| derivative | derivative |
| epitimes | epitimes |
| estpars | estpars |
| jagsfilter | jagsfilter |
| logcorr | logcorr |
| maxthreshold | maxthreshold |
| mcmcestpars | mcmcestpars |
| mcmctsir | mcmctsir |
| plotbeta | plotbeta |
| plotbreaks | plotbreaks |
| plotcases | plotcases |
| plotcomp | plotcomp |
| plotdata | plotdata |
| plotforward | plotforward |
| plotregression | plotregression |
| plotres | plotres |
| plotrho | plotrho |
| plotsbar | plotsbar |
| residual.births | residuals.births |
| residual.cases | residuals.cases |
| runtsir | runtsir |
| simulatetsir | simulatetsir |
| tsiRdata | tsiRdata |
| twentymeas | Measles incidence data from 20 cities |
| vplayout | vplayout |