Cost Constrained FLux Balance Analysis: MetabOlic Modeling with ENzyme kineTics (MOMENT)

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Documentation for package ‘sybilccFBA’ version 2.0.0

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sybilccFBA-package Cost Constrained Flux Balance Analysis(ccFBA)
addGlcTrns add Glucose Transport constraint
calc_MW Calculate molecular weights
cfba_moment Function: cfba_moment: implement MOMENT method
cfba_moment_mr Function: cfba_moment_mr: implement MOMENT method taking into account multifunctional enzymes
cfba_moment_pw Function: cfba_moment_pw: implement MOMENT method
getRevFlux getRevFlux
iAF1260 Escherichia coli Metabolic Model iAF1260
iJO1366 Escherichia coli Metabolic Model iJO1366
iMM904 Saccharomyces cerevisiae Metabolic Model
kcat Escherichia coli KCAT values used in MOMENT method
mw Escherichia coli molecular weight values used in MOMENT method
readmodel read MOMENT model
sybilccFBA Cost Constrained Flux Balance Analysis(ccFBA)
yst_kcat Saccharomyces cerevisiae KCAT values used in MOMENT method
yst_mw Saccharomyces cerevisiae molecular weight values used in MOMENT method