Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web


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Documentation for package ‘rsnps’ version 0.2.0

Help Pages

rsnps-package Get SNP (Single-Nucleotide Polymorphism) Data on the Web
allgensnp Get genotype data for all users at a particular snp.
allphenotypes Get all phenotypes, their variations, and how many users have data available for a given phenotype.
annotations Get all phenotypes, their variations, and how many users have data available for a given phenotype.
download_users Download openSNP user files.
fetch_genotypes Download genotype data for a user
genotypes Get genotype data for one or multiple users.
LDSearch Search for SNPs in Linkage Disequilibrium with a set of SNPs
ld_search Search for SNPs in Linkage Disequilibrium with a set of SNPs
NCBI_snp_query Query NCBI's dbSNP for information on a set of SNPs
ncbi_snp_query Query NCBI's dbSNP for information on a set of SNPs
NCBI_snp_query2 Query NCBI's dbSNP for information on a set of SNPs
ncbi_snp_query2 Query NCBI's dbSNP for information on a set of SNPs
phenotypes Get phenotype data for one or multiple users.
phenotypes_byid Get all known variations and all users sharing that phenotype for one phenotype(-ID).
read_users Read in openSNP user files from local storage.
rsnps Get SNP (Single-Nucleotide Polymorphism) Data on the Web
users Get openSNP users.