Searching for Footprints of Selection using Haplotype Homozygosity Based Tests


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Documentation for package ‘rehh’ version 2.0.2

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rehh-package Searching for footprints of selection using Haplotype Homozygosity based tests
bifurcation.diagram plot of an haplotype bifurcation diagram
calc_ehh EHH and iHH computations at a given core SNP
calc_ehhs EHHS and iES computations at a given core SNP
data2haplohh Converting data into an object of class haplohh
distribplot Distribution of standardized iHS or Rsb values
haplohh-class Class '"haplohh"'
haplohh_cgu_bta12 Example of an 'haplohh' object
ies2rsb Compute Rsb (standardized ratio of iES from two populations)
ies2xpehh Compute xpEHH (standardized ratio of iES from two populations) as described in Sabeti et al. (2007)
ihh2ihs Compute iHS (standardized iHH)
ihsplot Plot iHS over a genome
make.example.files Creating example input files
rehh Searching for footprints of selection using Haplotype Homozygosity based tests
rsbplot Plot Rsb over a genome
scan_hh Computing EHH based statistics over a whole chromosome
xpehhplot Plot XPEHH over a genome