R Interface to LibBi


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Documentation for package ‘rbi’ version 0.8.0

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rbi-package RBi - R interface for 'libbi'
add_block Add a block to a LibBi model
add_block.bi_model Add a block to a LibBi model
attach_file Attach a new file to a 'libbi' object
attach_file.libbi Attach a new file to a 'libbi' object
bi_contents Bi contents
bi_dim_len NetCDF dimension length
bi_file_summary NetCDF File Summary
bi_generate_dataset Bi Generate Dataset
bi_model Bi Model
bi_open Bi open
bi_read Bi Read
bi_write Create (init or observation) files for LibBi
Extract.bi_model Subset and replace model lines
extract_sample Extract a sample from a 'LibBi' run.
filter Using the LibBi wrapper to filter
filter.bi_model Using the LibBi wrapper to filter
filter.character Using the LibBi wrapper to filter
filter.libbi Using the LibBi wrapper to filter
fix Fix noise term, state or parameter of a libbi model
fix.bi_model Fix noise term, state or parameter of a libbi model
get_block Get the contents of a block in a LibBi model
get_block.bi_model Get the contents of a block in a LibBi model
get_name Get the name of a bi model
get_name.bi_model Get the name of a bi model
get_traces Get the parameter traces
insert_lines Insert lines in a LibBi model
insert_lines.bi_model Insert lines in a LibBi model
libbi LibBi Wrapper
netcdf_create_from_list Create NetCDF File from R list
optimise Using the LibBi wrapper to optimise
optimise.bi_model Using the LibBi wrapper to optimise
optimise.character Using the LibBi wrapper to optimise
optimise.libbi Using the LibBi wrapper to optimise
option_list Convert string to option list
option_string Convert Options
predict Using the LibBi wrapper to predict
predict.libbi Using the LibBi wrapper to predict
RBi RBi - R interface for 'libbi'
rbi RBi - R interface for 'libbi'
read_libbi Read results of a 'LibBi' run from an RDS file. This completely reconstructs the saved 'LibBi' object
remove_lines Remove line(s) and/or block(s) in a libbi model
remove_lines.bi_model Remove line(s) and/or block(s) in a libbi model
replace_all Replace all instances of a string with another in a model
replace_all.bi_model Replace all instances of a string with another in a model
rewrite Using the LibBi wrapper to rewrite
rewrite.bi_model Using the LibBi wrapper to rewrite
rewrite.character Using the LibBi wrapper to rewrite
rewrite.libbi Using the LibBi wrapper to rewrite
run Using the LibBi wrapper to launch LibBi
run.libbi Using the LibBi wrapper to launch LibBi
sample Using the LibBi wrapper to sample
sample.bi_model Using the LibBi wrapper to sample
sample.character Using the LibBi wrapper to sample
sample.libbi Using the LibBi wrapper to sample
save_libbi Write results of a 'LibBi' run to an RDS file
save_libbi.libbi Write results of a 'LibBi' run to an RDS file
set_name Set the name of a bi model
set_name.bi_model Set the name of a bi model
summary Print summary information about a 'libbi' object
summary.libbi Print summary information about a 'libbi' object
var_names Get variables
var_names.bi_model Get variables
write_model Writes a bi model to a file.
write_model.bi_model Writes a bi model to a file.
write_model.libbi Writes a bi model to a file.
[<-.bi_model Subset and replace model lines
`[<-.bi_model` Subset and replace model lines