AA |
AA - amino acid table |
aa2mass |
determine the weight if a fiven amino acid sequence |
apex |
fetuinLFQ - A data set for evaluation of relative and absolute label-free quantification methods. |
averagine |
averagine - a data set conatining isotope envelopes of averagine peptides |
bymatrix |
Compute the b and y Fragment Ions of a Peptide Sequence |
defaultIon |
Compute the b and y Fragment Ions of a Peptide Sequence |
deisotoper |
find isotop pattern in a given mass spectrum |
de_novo |
de-novo on tandem ms |
empai |
fetuinLFQ - A data set for evaluation of relative and absolute label-free quantification methods. |
fetuinLFQ |
fetuinLFQ - A data set for evaluation of relative and absolute label-free quantification methods. |
findNN |
find index of nearest neighbor |
findNN_ |
find index of nearest neighbor |
fragmentIon |
Compute the b and y Fragment Ions of a Peptide Sequence |
genMod |
Generates all possible modification of a given peptide seqence and modification pattern |
HexNAc |
HexNAc - Analysis of N-HexNAc glycopeptides by LC-MS/MS, using HCD and ETD fragmentation techniques |
ionseries |
Compute the b and y Fragment Ions of a Peptide Sequence |
iRT |
iRT peptides - independent retention time peptides |
irt |
iRT peptides - independent retention time peptides |
iRTpeptides |
iRT peptides - independent retention time peptides |
iTRAQ |
iTRAQ - A small 8-plex iTRAQ data set with confident identified peptides from 5 proteins. |
iTRAQ2GroupAnalysis |
iTRAQ two group analysis |
lcmsmap |
LC-MS Map |
lcmsoverview |
LC-MS Map |
massDeviationPlot |
Mass Deviation Plot |
mdp |
Mass Deviation Plot |
msms |
A data set containing tandem mass spectra of an LCMS experiment. |
NN |
find index of nearest neighbor |
NN_ |
find index of nearest neighbor |
parentIonMass |
Compute Parent Ion Mass of a Peptide Sequence |
peakplot |
Labelling of Peptide Fragment Mass Spectra |
peakplot.label |
Labelling of Peptide Fragment Mass Spectra |
peakplot.pie |
Labelling of Peptide Fragment Mass Spectra |
peakplot.putlabel |
Labelling of Peptide Fragment Mass Spectra |
pep3d |
LC-MS Map |
pepmass |
Compute Parent Ion Mass of a Peptide Sequence |
peptidespectrummatching |
compute a matching between a peptide sequence and a MS2 spectrum |
pgImporter |
Progenesis Importer Function |
pgLFQaov |
iTRAQ two group analysis |
pgLFQfeature |
pgLFQfeature - A data set with a featuremap export ProgenesisLCMS |
pgLFQprot |
pgLFQprot - A data set with a featuremap export ProgenesisLCMS |
pgLFQtNpq |
Label Free Quantification using the top N peptide approach |
pim |
Compute Parent Ion Mass of a Peptide Sequence |
ppp |
Plotting pressure profile data from Eksigent LC pumps |
pps |
A misc function for finding NN time slots in pressure profile data. |
pPTM |
PTM MarkerFinder |
pressureProfile |
NanoLC pressure profile |
pressureProfilePlot |
Plotting pressure profile data from Eksigent LC pumps |
pressureProfileSummary |
A misc function for finding NN time slots in pressure profile data. |
psm |
compute a matching between a peptide sequence and a MS2 spectrum |
PTM_MarkerFinder |
PTM MarkerFinder |
PTM_MarkerFinder_util |
PTM MarkerFinder util plot |
sigmamix |
MS dilution series of humen peptides. |
t3pq |
fetuinLFQ - A data set for evaluation of relative and absolute label-free quantification methods. |
tNpq |
Label Free Quantification using the top N peptide approach |