Tools and Plots for Multi-Well Plates


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Documentation for package ‘platetools’ version 0.0.2

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bhit_map Platemap to identify 'hits' following a B-score normalisation
b_grid Plots multiple b-scored normalised platemaps
b_map Plots a heatmap of b-score normalised values in a plate layout
b_score 2 way median polish
check_plate_input checks plate input for dodgy well plate combinations
dist_map Plots distributions per well in a plate layout
fill_plate Fill in missing wells
hit_grid Plots multiple platemaps with and identifies hits
hit_map Platemap to identify 'hits' in a screen
is_1536 internal 1536 plate function for plate_map
list_to_dataframe Converts list to a dataframe in a sensible way
med_smooth 2-way median smooth
missing_wells Returns wells that are missing from a complete plate
num_to_well Converts numbers to well labels
pchit_grid Plots multiple heatmaps identifying hits from the first principal component
pchit_map Plots a heatmap identifying hits from the first principal component
pc_grid Plots multiple platemaps as a heatmap of the first principal component.
pc_map Principal component heatmap in a plate layout
plate_effect Two way-median smooth on a plate map
plate_map creates dataframe of row,column,data from wellID and data
plate_map_grid creates dataframe of row, column, plate_id from data regarding wellIDs
plate_map_grid_scale creates dataframe of row, column, plate_id from data regarding wellIDs
plate_map_multiple row, column for multiple features
plate_map_scale creates dataframe of row, column, and scaled data from well IDs
plate_matrix plate layout matrix from well IDs
plt1536 ggplot plate object
plt384 ggplot plate object
plt96 ggplot plate object
raw_grid Plots multiple platemaps with heatmap of raw values
raw_map Plots a platemap with heatmap of raw values
readmap_data example data in a plate map form
read_map Annotates dataframe with metadata in a platemap matrix
rotate_plate rotates matrix by 180 degrees
well_to_num Converts well labels to numbers
z_grid Plots multiple platemaps with heatmap of scaled values
z_map Plots a platemap with heatmap of scaled values