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| aggregPlot | Rank Aggregation Plot |
| arabid | Subset of Arabidopsis RNA-Seq Data |
| clusterResults | Class "optCluster" |
| clusterResults-method | Class "optCluster" |
| getClValid | Class "optCluster" |
| getClValid-method | Class "optCluster" |
| getDataset | Class "optCluster" |
| getDataset-method | Class "optCluster" |
| getRankAggreg | Class "optCluster" |
| getRankAggreg-method | Class "optCluster" |
| measureNames | Class "optCluster" |
| measureNames-method | Class "optCluster" |
| methodNames | Class "optCluster" |
| methodNames-method | Class "optCluster" |
| methodRanks | Class "optCluster" |
| methodRanks-method | Class "optCluster" |
| optAssign | Class "optCluster" |
| optAssign-method | Class "optCluster" |
| optCluster | Determine Optimal Clustering Algorithm and Number of Clusters |
| optCluster-class | Class "optCluster" |
| optClusterObj | Class "optCluster" |
| optHeatmap | Optimal Hierarchical Clustering Heat Map |
| optimalScores | Class "optCluster" |
| optimalScores-method | Class "optCluster" |
| print-method | Class "optCluster" |
| repRankAggreg | Repeat Rank Aggregation |
| scoreRanks | Class "optCluster" |
| scoreRanks-method | Class "optCluster" |
| show-method | Class "optCluster" |
| summary-method | Class "optCluster" |
| topMethod | Class "optCluster" |
| topMethod-method | Class "optCluster" |
| valPlot | Validation Measure Plots |
| valScores | Class "optCluster" |
| valScores-method | Class "optCluster" |