Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses


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Documentation for package ‘onemap’ version 2.0-4

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onemap-package Software for constructing genetic maps
add.marker Add or Drop Markers From a Sequence
add_drop Add or Drop Markers From a Sequence
compare Compare all possible orders (exhaustive search) for a given sequence of markers
def.rf.3pts Three-point analysis of genetic markers
draw.map Draw a genetic map
drop.marker Add or Drop Markers From a Sequence
example.out Data from a full-sib family derived from two outbred parents
fake.bc.onemap Simulated data from a backcross population
fake.f2.onemap Simulated data from a F2 population
group Assign markers to linkage groups
haldane Mapping functions Haldane and Kosambi
kosambi Mapping functions Haldane and Kosambi
make.seq Create a sequence of markers
map Construct the linkage map for a sequence of markers
map_func Mapping functions Haldane and Kosambi
marker.type Informs the segregation patterns of markers
onemap Software for constructing genetic maps
order.seq Search for the best order of markers combining compare and try.seq functions
print.group Assign markers to linkage groups
print.rf.2pts Two-point analysis between genetic markers
print.try Try to map a marker into every possible position between markers
rcd Rapid Chain Delineation
read.mapmaker Read data from a Mapmaker raw file
read.outcross Read data from a segregating full-sib population
record Recombination Counting and Ordering
rf.2pts Two-point analysis between genetic markers
rf.graph.table Plots pairwise recombination fractions and LOD Scores using a color scale.
ripple.seq Compares and displays plausible alternative orders for a given linkage group
seriation Seriation
set.map.fun Defines the default mapping function
try.seq Try to map a marker into every possible position between markers
ug Unidirectional Growth
write.map Write a genetic map to a file