applyEmptyImageDimensions | Apply Subsetting from Empty Image Dimensions |
apply_empty_dim | Apply Subsetting from Empty Image Dimensions |
boxplot.anlz | Boxplot of Values in an Image |
boxplot.nifti | Boxplot of Values in an Image |
breaker | Find Breaks for nifti Image Ploting |
checkimg | Force object to filename |
checkimg-method | Force object to filename |
checkimg-methods | Force object to filename |
checknii | Force object to filename with .nii extension |
checknii-method | Force object to filename with .nii extension |
checknii-methods | Force object to filename with .nii extension |
checkniigz | Force object to filename with .nii.gz extension |
checkniigz-method | Force object to filename with .nii.gz extension |
checkniigz-methods | Force object to filename with .nii.gz extension |
check_mask | Check Mask is Binary |
check_mask_fail | Check Mask is Binary, Fail otherwise |
check_nifti | Check if nifti image or read in a nifti image |
check_nifti-method | Check if nifti image or read in a nifti image |
check_nifti-methods | Check if nifti image or read in a nifti image |
check_outfile | Check output filename |
cog | Image Center of Gravity |
colorbar | Add a colorbar to an ortho2 object |
copyNIfTIHeader | Copy NIfTI Header to an array |
datatype | Change Data type for img |
datatyper | Change Data type for img |
density.anlz | Density of Values in an Image |
density.nifti | Density of Values in an Image |
double_ortho | Double Orthographic Display |
dropEmptyImageDimensions | Drop Empty Image Dimensions |
drop_empty_dim | Drop Empty Image Dimensions |
ensure_nii | Force object to filename with .nii extension |
ensure_nii_gz | Force object to filename with .nii.gz extension |
fast_readnii | Reading NIfTI images through RNifti |
file_imgext | Get Image file extension |
finite_img | Finite Image |
finite_img-method | Finite Image |
finite_img-methods | Finite Image |
getEmptyImageDimensions | Get Empty Image Dimensions |
get_empty_dim | Get Empty Image Dimensions |
hist.anlz | Histogram of Values in an Image |
hist.nifti | Histogram of Values in an Image |
images2matrix | Transform set of images to matrix |
img_indices | Retrieve Image Indices |
maskEmptyImageDimensions | Make Mask from Empty Image Dimensions |
mask_empty_dim | Make Mask from Empty Image Dimensions |
mask_img | Mask nifti Image |
mask_vals | Extract or Replace Values Inside a Mask |
mask_vals-methods, | Extract or Replace Values Inside a Mask |
mask_vals<- | Extract or Replace Values Inside a Mask |
mask_vals<--method | Extract or Replace Values Inside a Mask |
mean.anlz | Mean of Values in an Image |
mean.nifti | Mean of Values in an Image |
multi_overlay | Create Multi-Image Plot with Overlays |
newnii | Resets image parameters for a copied nifti object |
niftiarr | Make new nifti from array |
nii.stub | Grab nii file stubname |
ortho2 | Orthographic Display, added options |
ortho_diff | Plot differences for Prediction and Gold Standard |
parse_img_ext | Parse Image Extensions |
quantile.anlz | Sample Quantiles |
quantile.nifti | Sample Quantiles |
quantile_img | Create Quantile Image |
randomize_mask | Randomize Image based on Mask |
readNIfTI2 | readNIfTI with default non-reorientation |
readnii | readNIfTI with default non-reorientation |
remake_img | Remake Image from Vector |
remap_filename | Build Filename (usually for images) |
replace_dropped_dimensions | Remake Dropped Dimensions |
replace_outside_surface | Replace Values Outside Surface of image |
rescale_img | Image Rescaler |
robust_window | Window image based on quantiles of Image |
same_dims | Check if Objects have Same Dimensions |
tempimg | Create temporary nii.gz file |
window_img | nifti image windower |
writeNIfTI2 | writeNIfTI with default non-reoirientation |
writenii | writeNIfTI with default non-reoirientation |
xyz | Image Center of Gravity Wrapper |
zero_pad | Zero pads an image |
zlimmer | Find Image z-limits |
zscore_img | Get Z-score over a margin of an img |