Extended Mixed Models Using Latent Classes and Latent Processes

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Documentation for package ‘lcmm’ version 1.7.8

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C D E F G H J L M P R S V W misc

lcmm-package Estimation of extended mixed models using latent classes and latent processes.

-- C --

coef.hlme Standard methods for estimated models
coef.Jointlcmm Standard methods for estimated models
coef.lcmm Standard methods for estimated models
coef.multlcmm Standard methods for estimated models
cuminc Predicted cumulative incidence of event according to a profile of covariates
C_calculustransfo For internal use only ...
C_cvpl For internal use only ...
C_hetmixcont For internal use only ...
C_hetmixcontmult For internal use only ...
C_hetmixlin For internal use only ...
C_hetmixord For internal use only ...
C_jointhet For internal use only ...
C_postprob2 For internal use only ...
C_predictcont For internal use only ...
C_predictmult For internal use only ...

-- D --

data_hlme Simulated dataset for hlme function
data_lcmm Simulated dataset for lcmm and Jointlcmm functions
Diffepoce Difference of expected prognostic cross-entropy (EPOCE) estimators and its 95% tracking interval between two joint latent class models estimated with 'Jointlcmm'
dynpred Individual dynamic predictions from a joint latent class model

-- E --

epoce Estimators of the Expected Prognostic Observed Cross-Entropy (EPOCE) for evaluating predictive accuracy of joint latent class models estimated using 'Jointlcmm'
estimates Maximum likelihood estimates
estimates.hlme Maximum likelihood estimates
estimates.Jointlcmm Maximum likelihood estimates
estimates.lcmm Maximum likelihood estimates
estimates.multlcmm Maximum likelihood estimates

-- F --

factor.names For internal use only ...
fitted.hlme Standard methods for estimated models
fitted.Jointlcmm Standard methods for estimated models
fitted.lcmm Standard methods for estimated models
fitted.multlcmm Standard methods for estimated models
fitY Marginal predictions of the longitudinal outcome(s) in their natural scale from 'lcmm', 'Jointlcmm' or 'multlcmm' objects
fitY.Jointlcmm Marginal predictions of the longitudinal outcome(s) in their natural scale from 'lcmm', 'Jointlcmm' or 'multlcmm' objects
fitY.lcmm Marginal predictions of the longitudinal outcome(s) in their natural scale from 'lcmm', 'Jointlcmm' or 'multlcmm' objects
fitY.multlcmm Marginal predictions of the longitudinal outcome(s) in their natural scale from 'lcmm', 'Jointlcmm' or 'multlcmm' objects
fixef Standard methods for estimated models
fixef.hlme Standard methods for estimated models
fixef.Jointlcmm Standard methods for estimated models
fixef.lcmm Standard methods for estimated models
fixef.multlcmm Standard methods for estimated models

-- G --

gridsearch Automatic grid search

-- H --

hlme Estimation of latent class linear mixed models

-- J --

jlcmm Estimation of joint latent class models for longitudinal and time-to-event data
Jointlcmm Estimation of joint latent class models for longitudinal and time-to-event data

-- L --

lcmm Estimation of mixed-effect models and latent class mixed-effect models for different types of outcomes (continuous Gaussian, continuous non-Gaussian or ordinal)

-- M --

mixture For internal use only ...
mlcmm Estimation of mutlivariate mixed-effect models and multivariate latent class mixed-effect models for multivariate longitudinal outcomes of possibly multiple types (continuous Gaussian, continuous non-Gaussian - curvilinear) that measure the same underlying latent process.
multlcmm Estimation of mutlivariate mixed-effect models and multivariate latent class mixed-effect models for multivariate longitudinal outcomes of possibly multiple types (continuous Gaussian, continuous non-Gaussian - curvilinear) that measure the same underlying latent process.

-- P --

paquid Longitudinal data on cognitive and physical aging in the elderly
plot.cuminc Plot of predicted cumulative incidences according to a profile of covariates
plot.Diffepoce Plots
plot.dynpred Plot of individual dynamic predictions
plot.epoce Plots
plot.hlme Plot of a fitted model
plot.Jointlcmm Plot of a fitted model
plot.lcmm Plot of a fitted model
plot.multlcmm Plot of a fitted model
plot.predict Plot of predicted trajectories and link functions
plot.predictL Plot of predicted trajectories and link functions
plot.predictL.Jointlcmm Plot of predicted trajectories and link functions
plot.predictL.lcmm Plot of predicted trajectories and link functions
plot.predictL.multlcmm Plot of predicted trajectories and link functions
plot.predictlink Plot of predicted trajectories and link functions
plot.predictlink.Jointlcmm Plot of predicted trajectories and link functions
plot.predictlink.lcmm Plot of predicted trajectories and link functions
plot.predictlink.multlcmm Plot of predicted trajectories and link functions
plot.predictY Plot of predicted trajectories and link functions
plot.predictY.hlme Plot of predicted trajectories and link functions
plot.predictY.Jointlcmm Plot of predicted trajectories and link functions
plot.predictY.lcmm Plot of predicted trajectories and link functions
plot.predictY.multlcmm Plot of predicted trajectories and link functions
postprob Posterior classification stemmed from a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' estimation
postprob.hlme Posterior classification stemmed from a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' estimation
postprob.Jointlcmm Posterior classification stemmed from a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' estimation
postprob.lcmm Posterior classification stemmed from a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' estimation
postprob.multlcmm Posterior classification stemmed from a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' estimation
predictL Class-specific marginal predictions in the latent process scale for 'lcmm', 'Jointlcmm' and 'multlcmm' objects
predictL.Jointlcmm Class-specific marginal predictions in the latent process scale for 'lcmm', 'Jointlcmm' and 'multlcmm' objects
predictL.lcmm Class-specific marginal predictions in the latent process scale for 'lcmm', 'Jointlcmm' and 'multlcmm' objects
predictL.multlcmm Class-specific marginal predictions in the latent process scale for 'lcmm', 'Jointlcmm' and 'multlcmm' objects
predictlink Confidence intervals for the estimated link functions from 'lcmm', 'Jointlcmm' and 'multlcmm'
predictlink.Jointlcmm Confidence intervals for the estimated link functions from 'lcmm', 'Jointlcmm' and 'multlcmm'
predictlink.lcmm Confidence intervals for the estimated link functions from 'lcmm', 'Jointlcmm' and 'multlcmm'
predictlink.multlcmm Confidence intervals for the estimated link functions from 'lcmm', 'Jointlcmm' and 'multlcmm'
predictY Marginal predictions (possibly class-specific) of a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' object in the natural scale of the longitudinal outcome(s) for a specified profile of covariates.
predictY.hlme Marginal predictions (possibly class-specific) of a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' object in the natural scale of the longitudinal outcome(s) for a specified profile of covariates.
predictY.Jointlcmm Marginal predictions (possibly class-specific) of a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' object in the natural scale of the longitudinal outcome(s) for a specified profile of covariates.
predictY.lcmm Marginal predictions (possibly class-specific) of a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' object in the natural scale of the longitudinal outcome(s) for a specified profile of covariates.
predictY.multlcmm Marginal predictions (possibly class-specific) of a 'hlme', 'lcmm', 'multlcmm' or 'Jointlcmm' object in the natural scale of the longitudinal outcome(s) for a specified profile of covariates.
print.Diffepoce Brief summary of a 'hlme', 'lcmm', 'Jointlcmm','multlcmm', 'epoce' or 'Diffepoce' objects
print.epoce Brief summary of a 'hlme', 'lcmm', 'Jointlcmm','multlcmm', 'epoce' or 'Diffepoce' objects
print.hlme Brief summary of a 'hlme', 'lcmm', 'Jointlcmm','multlcmm', 'epoce' or 'Diffepoce' objects
print.Jointlcmm Brief summary of a 'hlme', 'lcmm', 'Jointlcmm','multlcmm', 'epoce' or 'Diffepoce' objects
print.lcmm Brief summary of a 'hlme', 'lcmm', 'Jointlcmm','multlcmm', 'epoce' or 'Diffepoce' objects
print.multlcmm Brief summary of a 'hlme', 'lcmm', 'Jointlcmm','multlcmm', 'epoce' or 'Diffepoce' objects

-- R --

ranef Standard methods for estimated models
ranef.hlme Standard methods for estimated models
ranef.Jointlcmm Standard methods for estimated models
ranef.lcmm Standard methods for estimated models
ranef.multlcmm Standard methods for estimated models
residuals.hlme Standard methods for estimated models
residuals.Jointlcmm Standard methods for estimated models
residuals.lcmm Standard methods for estimated models
residuals.multlcmm Standard methods for estimated models
risqcum_spl For internal use only ...
risq_spl For internal use only ...

-- S --

summary.Diffepoce Summary of a 'hlme', 'lcmm', 'Jointlcmm', 'multlcmm', 'epoce' or 'Diffepoce' objects
summary.epoce Summary of a 'hlme', 'lcmm', 'Jointlcmm', 'multlcmm', 'epoce' or 'Diffepoce' objects
summary.hlme Summary of a 'hlme', 'lcmm', 'Jointlcmm', 'multlcmm', 'epoce' or 'Diffepoce' objects
summary.Jointlcmm Summary of a 'hlme', 'lcmm', 'Jointlcmm', 'multlcmm', 'epoce' or 'Diffepoce' objects
summary.lcmm Summary of a 'hlme', 'lcmm', 'Jointlcmm', 'multlcmm', 'epoce' or 'Diffepoce' objects
summary.multlcmm Summary of a 'hlme', 'lcmm', 'Jointlcmm', 'multlcmm', 'epoce' or 'Diffepoce' objects
summarytable Summary of models

-- V --

VarCov Variance-covariance of the estimates
VarCov.hlme Variance-covariance of the estimates
VarCov.Jointlcmm Variance-covariance of the estimates
VarCov.lcmm Variance-covariance of the estimates
VarCov.multlcmm Variance-covariance of the estimates
VarCovRE Estimates, standard errors and Wald test for the parameters of the variance-covariance matrix of the random effects.
VarCovRE.hlme Estimates, standard errors and Wald test for the parameters of the variance-covariance matrix of the random effects.
VarCovRE.Jointlcmm Estimates, standard errors and Wald test for the parameters of the variance-covariance matrix of the random effects.
VarCovRE.lcmm Estimates, standard errors and Wald test for the parameters of the variance-covariance matrix of the random effects.
VarCovRE.multlcmm Estimates, standard errors and Wald test for the parameters of the variance-covariance matrix of the random effects.
VarExpl Percentage of variance explained by the (latent class) linear mixed model regression
VarExpl.hlme Percentage of variance explained by the (latent class) linear mixed model regression
VarExpl.Jointlcmm Percentage of variance explained by the (latent class) linear mixed model regression
VarExpl.lcmm Percentage of variance explained by the (latent class) linear mixed model regression
VarExpl.multlcmm Percentage of variance explained by the (latent class) linear mixed model regression
vcov.hlme Standard methods for estimated models
vcov.Jointlcmm Standard methods for estimated models
vcov.lcmm Standard methods for estimated models
vcov.multlcmm Standard methods for estimated models

-- W --

WaldMult Multivariate Wald Test

-- misc --

.Contlcmm For internal use only ...
.Ordlcmm For internal use only ...
.plotbaselinerisk For internal use only ...
.plotfit For internal use only ...
.plotlinkfunctionmult For internal use only ...
.plotlinkfuntion For internal use only ...
.plotpostprob For internal use only ...
.plotresid For internal use only ...
.plotsurvival For internal use only ...