Evolutionary Parameter Estimation for 'Repast Simphony' Models

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Documentation for package ‘evoper’ version 0.4.0

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A B C E F G H I L M N O P R S U X

-- A --

abm.acor Ant colony optimization for continuous domains
abm.ees1 EvoPER Evolutionary Strategy 1
abm.ees2 EvoPER Evolutionary Strategy 2
abm.pso abm.pso
abm.saa abm.saa
acor.archive acor.archive
acor.F acor.F
acor.lthgaussian Select the lth gaussian function
acor.N acor.N
acor.probabilities Gaussian kernel choosing probability
acor.S acor.S
acor.sigma Sigma calculation for ACOr
acor.updateants acor.updateants
acor.W acor.W
acor.weigth Weight calculation for ant colony optimization
assert assert

-- B --

bestFitness bestFitness
bestSolution bestSolution

-- C --

cbuf cbuf
compare.algorithms1 compare.algorithms1
contourplothelper contourplothelper

-- E --

ees1.challenge ees1.challenge
ees1.explore ees1.explore
ees1.mating ees1.mating
ees1.mating1 ees1.mating1
ees1.mutation ees1.mutation
ees1.recombination ees1.recombination
ees1.selection ees.selection
elog.debug elog.debug
elog.error elog.error
elog.info elog.info
elog.level elog.level
enforceBounds enforceBounds
es.evaluate es.evaluate
Estimates Estimates
Estimates-class Estimates
extremize extremize

-- F --

f0.adtn.rosenbrock2 f0.adtn.rosenbrock2
f0.bohachevsky f0.bohachevsky
f0.bohachevsky4 f0.bohachevsky4
f0.cigar f0.cigar
f0.cigar4 f0.cigar4
f0.griewank f0.griewank
f0.griewank4 f0.griewank4
f0.nlnn.rosenbrock2 f0.nlnn.rosenbrock2
f0.periodtuningpp Period tuning for Predator-Prey base
f0.periodtuningpp12 Period tuning of 12 time units for Predator-Prey
f0.periodtuningpp24 Period tuning of 24 time units for Predator-Prey
f0.periodtuningpp48 Period tuning of 48 time units for Predator-Prey
f0.periodtuningpp72 Period tuning of 72 time units for Predator-Prey
f0.rosenbrock2 f0.rosenbrock2
f0.rosenbrock4 f0.rosenbrock4
f0.rosenbrockn f0.rosenbrockn
f0.schaffer f0.schaffer
f0.schaffer4 f0.schaffer4
f0.schwefel f0.schwefel
f0.schwefel4 f0.schwefel4
f0.test f0.test
f1.adtn.rosenbrock2 f1.adtn.rosenbrock2
f1.bohachevsky f1.bohachevsky
f1.cigar f1.cigar
f1.griewank f1.griewank
f1.nlnn.rosenbrock2 f1.nlnn.rosenbrock2
f1.rosenbrock2 f1.rosenbrock2
f1.rosenbrockn f1.rosenbrockn
f1.schaffer f1.schaffer
f1.schwefel f1.schwefel
f1.test f1.test
fixdfcolumns fixdfcolumns

-- G --

getFitness getFitness
getSolution getSolution
gm.mean gm.mean
gm.sd gm.sd

-- H --

histplothelper histplothelper

-- I --

initSolution initSolution

-- L --

lowerBound lowerBound

-- M --

Magnitude Magnitude

-- N --

naiveperiod naiveperiod

-- O --

ObjectiveFunction ObjectiveFunction class
ObjectiveFunction-class ObjectiveFunction class
Options Options
Options-class Options
OptionsACOR OptionsACOR
OptionsACOR-class OptionsACOR
OptionsEES1 OptionsEES1
OptionsEES1-class OptionsEES1
OptionsEES2 OptionsEES2
OptionsEES2-class OptionsEES2
OptionsFactory OptionsFactory
OptionsPSO OptionsPSO
OptionsPSO-class OptionsPSO
OptionsSAA OptionsSAA
OptionsSAA-class OptionsSAA

-- P --

partSolutionSpace partSolutionSpace
PlainFunction PlainFunction
PlainFunction-class PlainFunction
predatorprey predatorprey
predatorprey.plot0 predatorprey.plot0
predatorprey.plot1 predatorprey.plot1
pso.best pso.best
pso.chi pso.chi
pso.lbest pso.lbest
pso.neighborhood.K2 pso.neighborhood.K2
pso.neighborhood.K4 pso.neighborhood.K4
pso.neighborhood.KN pso.neighborhood.KN
pso.printbest pso.printbest
pso.Velocity pso.velocity

-- R --

random.wheel random.whell
RepastFunction RepastFunction
RepastFunction-class RepastFunction

-- S --

saa.bolt saa.bolt
saa.neighborhood saa.neighborhood
saa.neighborhood1 saa.neighborhood1
saa.neighborhoodH saa.neighborhoodH
saa.neighborhoodN saa.neighborhoodN
saa.tbyk saa.tbyk
saa.tcte saa.tcte
saa.texp saa.texp
scatterplotlothelper scatterplotlothelper
show.comp1 show.comp1
slope slope
slopes slopes
sortSolution sortSolution
summarize.comp1 summarize.comp1

-- U --

upperBound upperBound

-- X --

xmeanci1 xmeanci1
xmeanci2 xmeanci2
xyplothelper xyplothelper