Automated C Code Generation for 'deSolve', 'bvpSolve' and 'Sundials'

Documentation for package ‘cOde’ version 0.3

cOde-package	Automated C Code Generation for Use with the "deSolve" and "bvpSolve" Packages
adjointSymb	Compute adjoint equations of a function symbolically
bvptwpC	Interface to bvptwp()
cOde	Automated C Code Generation for Use with the "deSolve" and "bvpSolve" Packages
compileAndLoad	Compile and load shared object implementing the ODE system.
cvodesSyntax	Sundials::cvodes: Replace powers and symbols to get correct C++ syntax for cvodes.
forcData	Forcings data.frame
funC	Generate C code for a function and compile it
getSymbols	Get symbols from a character
jacobianSymb	Compute Jacobian of a function symbolically
odeC	Interface to ode()
oxygenData	Time-course data of O, O2 and O3
prodSymb	Compute matrix product symbolically
reduceSensitivities	reduceSensitivities
replaceOperation	Replace a binary operator in a string by a function
replaceSymbols	Replace symbols in a character vector by other symbols
sensitivitiesSymb	Compute sensitivity equations of a function symbolically
setForcings	Generate interpolation spline for the forcings and write into list of matrices
sumSymb	Compute matrix sumSymbolically
sundialsIncludes	Infos and includes for sundials::cvodes C++ code: ODE, Jacobian.
sundialsJac	Implement the Jacobian of the ODE system for sundials::cvodes.
sundialsOde	Implement the ODE system for sundials::cvodes.
sundialsSensOde	Implement sensitivities for an ODE system, sundials::cvodes.
wrap_cvodes	Solve an inital value problem with cvodes.