Metagenomics Longitudinal Differential Abundant Method


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Documentation for package ‘MetaLonDA’ version 1.0.4

Help Pages

areaPermutation Calculate Area Ratio of time intervals for all permutations
curveFitting Fit longitudinal data
findSigInterval Find Significant Time Intervals
intervalArea Calculate Area Ratio of time intervals
metalonda Metagenomic Longitudinal Differential Abundant Analysis for one feature
metalondaAll Metagenomic Longitudinal Differential Abundant Analysis for all features
metalonda_test_data Simulated data for OTU abundance for 2 phenotypes each has 5 subjects at 10-time points
permutation Permute group labels
visualizeArea Visualize significant time interval
visualizeARHistogram Visualize histogram of the Area Ratio
visualizeFeature Visualize Longitudinal Feature
visualizeFeatureSpline Visualize Feature with the fitted Splines