MSIseq-package |
Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Tumor Exome Somatic Mutations |
Compute.input.variables |
Compute Mutation Counts from Tumor Exome Somatic Mutations |
find.mono.repeats |
Find Mono-nucleotide Repeats |
MSIseq |
Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Tumor Exome Somatic Mutations |
MSIseq.classify |
Classify Microsatellite Instability with MSIseq Classifier |
MSIseq.train |
Build Microsatellite Instability Classification Model with Training Dataset |
NGStestdata |
Mutation Annotation Data with Test Set Samples |
NGStestseqLen |
Capture Sequence Length for Test Set Samples |
NGStesttype |
Cancer Types for the TCGA Test Set Samples |
NGStrainclass |
MSI Status Classification for the TCGA Training Set Samples |
NGStraindata |
Mutation Annotation Data with Training Set Samples |
NGStrainseqLen |
Capture Sequence Length for Training Set Samples |
NGStraintype |
Cancer Types for the TCGA Training Set Samples |
read.fasta |
Read Fasta File |
test.mutationNum |
Table of Mutation Numbers in Test Set Samples |
train.mutationNum |
Table of Mutation Numbers in Train Set Samples |