Inference Using Simulation


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Documentation for package ‘Infusion’ version 1.0.0

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Infusion-package Inference using simulation
add_reftable Create or augment a list of simulated distributions of summary statistics
add_simulation Create or augment a list of simulated distributions of summary statistics
boundaries-attribute Discrete probability masses and NA/NaN/Inf in distributions of summary statistics.
confint Compute confidence intervals by (profile) summary likelihood
confint.SLik Compute confidence intervals by (profile) summary likelihood
confint.SLikp Compute confidence intervals by (profile) summary likelihood
confint.SLik_j Compute confidence intervals by (profile) summary likelihood
densb Saved computations of inferred log-likelihoods
densv Saved computations of inferred log-likelihoods
handling_NAs Discrete probability masses and NA/NaN/Inf in distributions of summary statistics.
infer_logLs Infer log Likelihoods using simulated distributions of summary statistics
infer_logL_by_GLMM Infer log Likelihoods using simulated distributions of summary statistics
infer_logL_by_Hlscv.diag Infer log Likelihoods using simulated distributions of summary statistics
infer_logL_by_mclust Infer log Likelihoods using simulated distributions of summary statistics
infer_logL_by_Rmixmod Infer log Likelihoods using simulated distributions of summary statistics
infer_SLik_joint Infer as (summary) likelihood surface from simulation table
infer_surface Infer a (summary) likelihood or tail probability surface from inferred likelihoods
infer_surface.logLs Infer a (summary) likelihood or tail probability surface from inferred likelihoods
infer_surface.tailp Infer a (summary) likelihood or tail probability surface from inferred likelihoods
infer_tailp Infer log Likelihoods using simulated distributions of summary statistics
Infusion Inference using simulation
Infusion.getOption Infusion options settings
Infusion.options Infusion options settings
init_grid Define starting points in parameter space.
MSL Maximum likelihood from an inferred likelihood surface
multi_binning Multivariate histogram
plot.SLik Plot SLik or SLikp objects
plot.SLikp Plot SLik or SLikp objects
plot.SLik_j Plot SLik or SLikp objects
plot1Dprof Plot likelihood profiles
plot2Dprof Plot likelihood profiles
profile Compute profile summary likelihood
profile.SLik Compute profile summary likelihood
profile.SLik_j Compute profile summary likelihood
project Learn a projection method for statistics and applies it
project.character Learn a projection method for statistics and applies it
project.default Learn a projection method for statistics and applies it
refine Refine estimates iteratively.
refine.default Refine estimates iteratively.
refine.SLik Refine estimates iteratively.
refine.SLikp Refine estimates iteratively.
refine.SLik_j Refine estimates iteratively.
rparam Sample the parameter space
sample_volume Sample the parameter space
saved_seed Saved computations of inferred log-likelihoods