Corbi-package |
Corbi - Collection of Rudimentary Bioinformatics Tools |
best_subnets |
The best subnetworks |
column |
Extract a column from a matrix |
Corbi |
Corbi - Collection of Rudimentary Bioinformatics Tools |
extend_subnets |
Extend subnetworks from smaller subnetworks |
get_shortest_distances |
Calculate shortest distances of unweighted network |
get_subnets |
All subnetworks of limited size |
kappa_score |
Cohen's kappa score |
markrank |
MarkRank |
net_align |
Network alignment method based on conditional random fields |
net_query |
Network querying method based on conditional random fields |
net_query_batch |
Network querying method based on conditional random fields |
nnzero |
The number of non-zero values of a submatrix |
read_net |
Read network information from text file |
rmultihyper |
The Multivariate Hypergeometric Distribution |
submatrix |
Extract a submatrix from a matrix |
write_net |
Write network information to text file |