EpiModel-package |
Mathematical Modeling of Infectious Disease Dynamics |
absdiffby |
Definition for absdiffby ERGM Term |
absdiffnodemix |
Definition for absdiffnodemix ERGM Term |
add_attr |
Functions to Access and Edit the Master List Object in Network Models |
add_control |
Functions to Access and Edit the Master List Object in Network Models |
add_epi |
Functions to Access and Edit the Master List Object in Network Models |
add_init |
Functions to Access and Edit the Master List Object in Network Models |
add_param |
Functions to Access and Edit the Master List Object in Network Models |
append_attr |
Functions to Access and Edit the Master List Object in Network Models |
append_core_attr |
Functions to Access and Edit the Master List Object in Network Models |
apportion_lr |
Apportion Least-Remainder Method |
as.data.frame.dcm |
Extract Model Data for Deterministic Compartmental Models |
as.data.frame.icm |
Extract Model Data for Stochastic Models |
as.data.frame.netdx |
Extract Timed Edgelists netdx Objects |
as.data.frame.netsim |
Extract Model Data for Stochastic Models |
as.network.transmat |
Converts transmat infection tree into a network object |
as.phylo.transmat |
Convert transmat infection tree into a phylo object |
check_degdist_bal |
Check Degree Distribution for Balance in Target Statistics |
color_tea |
Creates a TEA Variable for Infection Status for 'ndtv' Animations |
comp_plot |
Plot Compartment Diagram for Epidemic Models |
comp_plot.dcm |
Plot Compartment Diagram for Epidemic Models |
comp_plot.icm |
Plot Compartment Diagram for Epidemic Models |
comp_plot.netsim |
Plot Compartment Diagram for Epidemic Models |
control.dcm |
Control Settings for Deterministic Compartmental Models |
control.icm |
Control Settings for Stochastic Individual Contact Models |
control.net |
Control Settings for Stochastic Network Models |
dcm |
Deterministic Compartmental Models |
dissolution_coefs |
Dissolution Coefficients for Stochastic Network Models |
edgelist_censor |
Table of Edge Censoring |
EpiModel |
Mathematical Modeling of Infectious Disease Dynamics |
epiweb |
EpiModel Web |
generate_random_params |
Generate Values for Random Parameters |
geom_bands |
ggplot2 geom for Quantile Bands |
get_args |
Get Arguments from EpiModel Parameterization Functions |
get_attr |
Functions to Access and Edit the Master List Object in Network Models |
get_attr_list |
Functions to Access and Edit the Master List Object in Network Models |
get_control |
Functions to Access and Edit the Master List Object in Network Models |
get_control_list |
Functions to Access and Edit the Master List Object in Network Models |
get_degree |
Get Individual Degree from Network or Edgelist |
get_epi |
Functions to Access and Edit the Master List Object in Network Models |
get_epi_list |
Functions to Access and Edit the Master List Object in Network Models |
get_formula_term_attr |
Outputs ERGM Formula Attributes into a Character Vector |
get_init |
Functions to Access and Edit the Master List Object in Network Models |
get_init_list |
Functions to Access and Edit the Master List Object in Network Models |
get_network |
Extract networkDynamic and network Objects from Network Simulations |
get_network_term_attr |
Outputs ERGM Formula Attributes into a Character Vector |
get_nwstats |
Extract Network Statistics from netsim or netdx Object |
get_param |
Functions to Access and Edit the Master List Object in Network Models |
get_param_list |
Functions to Access and Edit the Master List Object in Network Models |
get_posit_ids |
Convert Unique identifiers from/to Positional identifiers |
get_sims |
Extract Network Simulations |
get_transmat |
Extract Transmissions Matrix from Network Epidemic Model |
get_unique_ids |
Convert Unique identifiers from/to Positional identifiers |
icm |
Stochastic Individual Contact Models |
init.dcm |
Initial Conditions for Deterministic Compartmental Models |
init.icm |
Initial Conditions for Stochastic Individual Contact Models |
init.net |
Initial Conditions for Stochastic Network Models |
InitErgmTerm.absdiffby |
Definition for absdiffby ERGM Term |
InitErgmTerm.absdiffnodemix |
Definition for absdiffnodemix ERGM Term |
is.transmat |
Extract Transmissions Matrix from Network Epidemic Model |
merge.icm |
Merge Data across Stochastic Individual Contact Model Simulations |
merge.netsim |
Merge Model Simulations Across netsim Objects |
modules.icm |
Modules for Stochastic Individual Contact Models |
modules.net |
Modules for Stochastic Network Models |
mutate_epi |
Add New Epidemiology Variables |
net-accessor |
Functions to Access and Edit the Master List Object in Network Models |
netdx |
Dynamic Network Model Diagnostics |
netest |
Dynamic Network Model Estimation |
netsim |
Stochastic Network Models |
nwupdate.net |
Dynamic Network Updates |
param.dcm |
Epidemic Parameters for Deterministic Compartmental Models |
param.icm |
Epidemic Parameters for Stochastic Individual Contact Models |
param.net |
Epidemic Parameters for Stochastic Network Models |
param_random |
Create a Value Sampler for Random Parameters |
plot.dcm |
Plot Data from a Deterministic Compartmental Epidemic Model |
plot.icm |
Plot Data from a Stochastic Individual Contact Epidemic Model |
plot.netdx |
Plot Dynamic Network Model Diagnostics |
plot.netsim |
Plot Data from a Stochastic Network Epidemic Model |
plot.transmat |
Plot transmat infection tree in one of several styles |
set_attr |
Functions to Access and Edit the Master List Object in Network Models |
set_control |
Functions to Access and Edit the Master List Object in Network Models |
set_epi |
Functions to Access and Edit the Master List Object in Network Models |
set_init |
Functions to Access and Edit the Master List Object in Network Models |
set_param |
Functions to Access and Edit the Master List Object in Network Models |
set_transmat |
Save Transmission Matrix |
summary.dcm |
Summary Model Statistics |
summary.icm |
Summary Model Statistics |
summary.netsim |
Summary Model Statistics |
transmat |
Extract Transmissions Matrix from Network Epidemic Model |
truncate_sim |
Truncate Simulation Time Series |
unique_id-tools |
Convert Unique identifiers from/to Positional identifiers |
update_dissolution |
Adjust Dissolution Component of Network Model Fit |
update_params |
Update Model Parameters for Stochastic Network Models |