agecalc |
Calculates age |
ageLinearModel |
linear model for age effect on visual sensitivity |
bebie |
Bebie curve |
cart2jpolar |
convert from Cartesian coordinate to polar coordinates for use with the Jansonius map |
colormapgraph |
color legend for p-values in td and pd probability plots |
createviewport |
Wrapup for createviewport in package 'grid' |
csplocmap |
xy-position mapping between CSP-custom-device convention (William H Swanson perimeter) and visualFields convention for patterns of location |
fdplocmap |
xy-position mapping between FDP device convention and visualFields convention for patterns of location |
fiberpathpsi |
Average path of a nerve fiber bundle function generator |
filterReliability |
identify visual fields that did not pass filter for reliability |
gcdisp |
average GC displacement from [1] |
gcloc2psi |
Angle of incidence in the optic nerve head for vf locations |
getnv |
get normative values and location map |
ghpostd |
general height estimated as the rankRef-th ranked TD location |
ghranktd |
general height estimated from rank TD curve |
gloperc |
percentiles for global indices |
hist_poplr |
histogram for PoPLR analysis |
jpolar2cart |
converts to '(x,y)' in degrees from polar coordinates |
lidLensArtifact |
visual fields with lid or lens artifacts |
loadvfcsv |
load visual fields from a CSV file |
loadvfEyesuite |
Import visual field data from Haag-Streit Eyesuite |
loadvfxml |
loads visual fields from a XML file |
loadvfxmlbatch |
loads visual fields from a set of XML files |
locperc |
percentiles for each location |
nvcspsgalpha |
IU normative reference values for Contrast Sensitiviy Perimetro. Alpha version!!! |
nvsapdefault |
SUNY-IU normative reference values for static automated perimetry |
pdpmap |
probability map for pattern deviation |
pdpmapghr |
probability map for pattern deviation from global sensitivity estimate |
pdval |
pattern deviation |
pdvalghr |
pattern deviation from general height rank (GHr) |
poplr |
permutation of Pointwise Linear Regression (PoPLR) |
poplr_cstat |
permutation of pointwise linear regression (PoPLR): calculation of the combined statistic |
poplr_pstat |
Permutation of Pointwise Linear Regression (PoPLR): calculation of the p-value |
progols |
progression by linear ordinary least squares |
psi2oct |
Angle of incidence in the OCT scan corresponding to angle of incidence in optic nerve head |
quad2Dfit |
two-dimensional quadratic fitting for visual-field results |
retestconddist |
Conditional retest distribution |
ringmapgraph |
ring legend for p-values |
saplocmap |
xy-position mapping between HFA device convention and visualFields convention for patterns of location |
sdnv |
standard deviations of normative values |
sdnvghr |
standard deviations of normative values of PD from general-height-rank |
setnv |
set normative values and location map |
stimLoc |
stimulus location and size |
tdpmap |
probability map for total deviation |
tdrank |
total-deviation rank curve |
tdrankadjperc |
percentiles for adjusted TD rank curve |
tdrankglm |
GLM fit for TD rank curve |
tdranknv |
normative values for TD rank curve |
tdrankperc |
percentiles for TD rank curve |
tdval |
total deviation |
vf |
visualField objects |
vf2gcloc |
Calculates the location of the GC soma corresponding to vf locations |
vf91016csp1vf |
a vf-object with CSP sample data with |
vf91016left |
a vf-object with SAP sample data |
vf91016right |
a vf-object with SAP sample data |
vfArtes2014 |
Short-term retest static automated perimetry data |
vfaverage |
average of vf-objects |
vfcolormap |
Color code for TD or PD probability maps |
vfdemographics |
demographics and statistics of sample in visual-fields object vf |
vfenv |
environment with the current normative values used 'visualFields' |
vfgrayscale |
gray scales for sensitivities |
vfidefault |
Settings of visual field index |
vfindex |
visual field index |
vfindexpmap |
probability values for visual field index |
vfiperc |
percentiles for visual field index |
vflayout |
printout with results for the visual field |
vflayoutghr |
printout with results for the visual field |
vflayout_poplr |
layout displaying the PoPLR analysis |
vflayout_progress |
progression analysis layout |
vfplot |
visual field plot |
vfplotloc |
visual field data plot |
vfplot_legoplot |
legoplot for PoPLR analysis |
vfplot_plr |
plot with the PLR analysis |
vfplot_sparklines |
Sparklines |
vfsegmentcoord |
calculate line segments to plot in 'vfplot' representing the overall orientation of the retinal nerve fibre layer bundles according to Jansonious map [1] |
vfselectvisit |
select visits per subject from a vf-object |
vfsettings |
Settings of visualField object |
vfShafi2011 |
SUNY-IU control data for static automated perimetry 10-2 SITA Standard |
vfsort |
sort vf-objects |
vfstats |
visual field stats |
vfstatspmap |
probability values for visual field global indices |
vftessellation |
Voronoi tessellation of vf spatial testing locations |
visualFields |
Statistical methods for visual fields |
xmlblock |
extracts a block from the XML file |
xmldevval |
extracts total-deviation values, pattern-deviation values, total-deviation probability values, and pattern-deviation probability values |
xmlitem |
extracts from a loaded XML file the info of a tag |
xmlvfval |
extracts visual-field sensitivity values |
xmlvfxy |
dxtraction of (x,y)-coordinates of tested locations |