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Documentation for package ‘userfriendlyscience’ version 0.7.2

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A B C D E F G H I K L M N O P Q R S T U V misc

userfriendlyscience-package Userfriendlyscience (UFS)

-- A --

addToLog userfriendlyscience basics
areColors Check whether elements of a vector are valid colors
associationMatrix associationMatrix
associationMatrixESDefaults associationMatrix Helper Functions
associationMatrixStatDefaults associationMatrix Helper Functions
associationsDiamondPlot A diamondplot with confidence intervals for associations
associationsToDiamondPlotDf A diamondplot with confidence intervals for associations
asymmetricalScatterMatrix asymmetricalScatterMatrix
averageFishersZs averageFishersZs
averagePearsonRs averagePearsonRs

-- B --

basicSPSStranslationFunctions Basic SPSS translation functions
biAxisDiamondPlot Diamondplot with two Y axes

-- C --

cat0 userfriendlyscience basics
checkDataIntegrity Conveniently checking data integrity
CIBER Confidence Interval-Based Estimation of Relevance (CIBER)
cohensdCI The distribution of Cohen's _d_
computeEffectSize_d associationMatrix Helper Functions
computeEffectSize_etasq associationMatrix Helper Functions
computeEffectSize_omegasq associationMatrix Helper Functions
computeEffectSize_r associationMatrix Helper Functions
computeEffectSize_v associationMatrix Helper Functions
computeStatistic_chisq associationMatrix Helper Functions
computeStatistic_f associationMatrix Helper Functions
computeStatistic_r associationMatrix Helper Functions
computeStatistic_t associationMatrix Helper Functions
confIntD The distribution of Cohen's _d_
confIntOmegaSq Confidence intervals for Omega Squared
confIntProp Confidence intervals for proportions, vectorized over all arguments
confIntR A function to compute a correlation's confidence interval
confIntV crossTab, confIntV and cramersV
convert conversion functions
convert.b.to.t conversion functions
convert.chisq.to.p conversion functions
convert.chisq.to.V conversion functions
convert.cohensf.to.omegasq conversion functions
convert.cohensfsq.to.omegasq conversion functions
convert.d.to.eer Helper functions for Numbers Needed for Change
convert.d.to.logodds conversion functions
convert.d.to.nnc Helper functions for Numbers Needed for Change
convert.d.to.r conversion functions
convert.d.to.t conversion functions
convert.d.to.variance conversion functions
convert.er.to.threshold Visualising Numbers Needed for Change
convert.etasq.to.cohensf conversion functions
convert.etasq.to.r conversion functions
convert.f.to.d conversion functions
convert.f.to.etasq conversion functions
convert.f.to.omegasq conversion functions
convert.f.to.p conversion functions
convert.fisherz.to.r conversion functions
convert.logodds.to.d conversion functions
convert.logodds.to.r conversion functions
convert.means.to.d conversion functions
convert.ncf.to.omegasq conversion functions
convert.omegasq.to.cohensf conversion functions
convert.omegasq.to.cohensfsq conversion functions
convert.omegasq.to.f conversion functions
convert.or.to.d conversion functions
convert.or.to.r conversion functions
convert.percentage.to.se conversion functions
convert.r.to.d conversion functions
convert.r.to.fisherz conversion functions
convert.r.to.p conversion functions
convert.r.to.t conversion functions
convert.t.to.d conversion functions
convert.t.to.p conversion functions
convert.t.to.r conversion functions
convert.threshold.to.er Visualising Numbers Needed for Change
convert.V.to.r conversion functions
convertToNumeric userfriendlyscience basics
cramersV crossTab, confIntV and cramersV
createSigma createSigma: convenience function for mvrnorm
crossTab crossTab, confIntV and cramersV
curfnfinder Function to find the name of the calling function

-- D --

dataShape normalityAssessment and samplingDistribution
dCohensd The distribution of Cohen's _d_
dd The distribution of Cohen's _d_
descr descr (or descriptives)
descriptives descr (or descriptives)
detectRareWords Looking up word frequencies
determinantStructure Determinant Structure specification
determinantVar Determinant Structure specification
detStructAddVarLabels Functions to preprocess determinant structures
detStructAddVarNames Functions to preprocess determinant structures
detStructCIBER Confidence Interval-Based Estimation of Relevance (CIBER)
detStructComputeProducts Functions to preprocess determinant structures
detStructComputeScales Functions to preprocess determinant structures
diamondCoordinates Basic ggplot2 diamond plot layer construction functions
diamondPlot Basic diamond plot construction function
didacticPlot didacticPlot
didacticPlotTheme didacticPlot
dlvPlot dlvPlot
dlvTheme dlvPlot
domegaSq The distribution of Omega Squared
dRsq The distribution of R squared (as obtained in a regression analysis)
duoComparisonDiamondPlot meansComparisonDiamondPlot and duoComparisonDiamondPlot

-- E --

erDataSeq Visualising Numbers Needed for Change
escapeBS Escapes any characters that would have special meaning in a reqular expression.
escapeRegex Escapes any characters that would have special meaning in a reqular expression.
examine Examine one or more variables
examineBy Examine one or more variables
exceptionalScore exceptionalScore
exceptionalScores exceptionalScores
exportToSPSS Basic SPSS translation functions
extractVarName Extract variable names

-- F --

facComAnalysis Wrapper for psych's factor analysis and principal components analysis functions
faConfInt Extract confidence bounds from psych's factor analysis object
factorLoadingDiamondCIplot Two-dimensional visualisation of factor analyses
fanova Flexible anova
filterBy Basic SPSS translation functions
findShortestInterval Find the shortest interval
formatCI Pretty formatting of confidence intervals
formatPvalue userfriendlyscience basics
formatR userfriendlyscience basics
freq Frequency tables
frequencies Frequency tables
Frequency Frequency tables
fullFact fullFact

-- G --

genlog Generalized Logistic Analysis
genlogCompleteStartValues Generalized Logistic Analysis
genlogFunction Generalized Logistic Function
getDat Basic SPSS translation functions
getData Basic SPSS translation functions
ggBarChart Bar chart using ggplot
ggBoxplot Box plot using ggplot
ggConfidenceCurve Confidence Curves
ggDiamondLayer Basic ggplot2 diamond plot layer construction functions
ggEasyBar Convenience functions for ggplots based on multiple variables
ggEasyPlots Convenience functions for ggplots based on multiple variables
ggEasyRidge Convenience functions for ggplots based on multiple variables
ggGenLogPlot Generalized Logistic Analysis
ggNNC Visualising Numbers Needed for Change
ggPie A ggplot pie chart
ggProportionPlot Sample distribution based plotting of proportions
ggqq Easy ggplot Q-Q plot

-- H --

hasLaTeX rnwString functions

-- I --

ifelseObj userfriendlyscience basics
importLimeSurveyData importLimeSurveyData
invertItem userfriendlyscience basics
invertItems invertItems
iqrOutlier Identify outliers according to the IQR criterion
is.even userfriendlyscience basics
is.nr is.nr
is.odd userfriendlyscience basics
isTrue isTrue
itemInspection itemInspection

-- K --

knitFig Easily knit a custom figure fragment

-- L --

logRegr Userfriendly wrapper to do logistic regression in R

-- M --

makeScales scaleInspection and a number of useful helper functions
massConvertToNumeric userfriendlyscience basics
meanConfInt scaleInspection and a number of useful helper functions
meanDiff meanDiff
meanDiff.multi meanDiff.multi
meansComparisonDiamondPlot meansComparisonDiamondPlot and duoComparisonDiamondPlot
meansDiamondPlot Diamond plots
meanSDtoDiamondPlot A diamond plot based on means, standard deviations, and sample sizes
mediaan Basic SPSS translation functions
modus Basic SPSS translation functions
multiResponse Generate a table for multiple response questions
multiVarFreq Generate a table collapsing frequencies of multiple variables

-- N --

nnc Numbers Needed for Change
nnt Numbers Needed for Change
normalityAssessment normalityAssessment and samplingDistribution
noZero userfriendlyscience basics

-- O --

oddsratio oddsratio
oneway oneway

-- P --

paginatedAsymmetricalScatterMatrix paginatedAsymmetricalScatterMatrix
pander.associationMatrix userfriendlyscience methods to pander objects
pander.crossTab userfriendlyscience methods to pander objects
pander.dataShape userfriendlyscience methods to pander objects
pander.descr userfriendlyscience methods to pander objects
pander.examine userfriendlyscience methods to pander objects
pander.examineBy userfriendlyscience methods to pander objects
pander.freq userfriendlyscience methods to pander objects
pander.frequencies userfriendlyscience methods to pander objects
pander.meanDiff userfriendlyscience methods to pander objects
pander.normalityAssessment userfriendlyscience methods to pander objects
pander.oneway userfriendlyscience methods to pander objects
pander.regr userfriendlyscience methods to pander objects
parallelSubscales testRetestCES
pCohensd The distribution of Cohen's _d_
pd The distribution of Cohen's _d_
pdExtreme The distribution of Cohen's _d_
pdInterval The distribution of Cohen's _d_
pdMild The distribution of Cohen's _d_
piecewiseRegr Piecewise regression analysis
plot.determinantStructure Determinant Structure specification
pomegaSq The distribution of Omega Squared
posthocTGH posthocTGH
powerHist powerHist
prevalencePower Power analysis for establishing a prevalence
print.associationMatrix userfriendlyscience print methods
print.asymmetricalScatterMatrix userfriendlyscience print methods
print.cohensdCI userfriendlyscience print methods
print.confIntOmegaSq userfriendlyscience print methods
print.confIntV userfriendlyscience print methods
print.CramersV userfriendlyscience print methods
print.crossTab userfriendlyscience print methods
print.dataShape userfriendlyscience print methods
print.descr userfriendlyscience print methods
print.determinantStructure Determinant Structure specification
print.didacticPlot userfriendlyscience print methods
print.dlvPlot userfriendlyscience print methods
print.examine userfriendlyscience print methods
print.examineBy userfriendlyscience print methods
print.fanova userfriendlyscience print methods
print.freq userfriendlyscience print methods
print.frequencies userfriendlyscience print methods
print.fullFact userfriendlyscience print methods
print.genlog userfriendlyscience print methods
print.ggProportionPlot userfriendlyscience print methods
print.logRegr userfriendlyscience print methods
print.meanConfInt userfriendlyscience print methods
print.meanDiff userfriendlyscience print methods
print.meanDiff.multi userfriendlyscience print methods
print.nnc userfriendlyscience print methods
print.normalityAssessment userfriendlyscience print methods
print.oddsratio userfriendlyscience print methods
print.oneway userfriendlyscience print methods
print.parallelSubscales userfriendlyscience print methods
print.piecewiseRegr userfriendlyscience print methods
print.posthocTGH userfriendlyscience print methods
print.power.htest.ufs userfriendlyscience print methods
print.powerHist userfriendlyscience print methods
print.processOpenSesameIAT userfriendlyscience print methods
print.processOpenSesameIAT.log userfriendlyscience print methods
print.regr userfriendlyscience print methods
print.regrInfluential userfriendlyscience print methods
print.rMatrix userfriendlyscience print methods
print.scaleDiagnosis userfriendlyscience print methods
print.scaleInspection userfriendlyscience print methods
print.scaleStructure userfriendlyscience print methods
print.scatterMatrix userfriendlyscience print methods
print.sdConfInt userfriendlyscience print methods
print.testRetestAlpha userfriendlyscience print methods
print.testRetestCES userfriendlyscience print methods
print.testRetestReliability userfriendlyscience print methods
print.therapyMonitor userfriendlyscience print methods
print.therapyMonitor.multi userfriendlyscience print methods
prob.randomizationSuccess Computations for successful randomization
processLimeSurveyDropouts processLimeSurveyDropouts
processLSvarLabels A function to conveniently process LimeSurvey labels
processOpenSesameIAT processOpenSesameIAT
pRsq The distribution of R squared (as obtained in a regression analysis)
pwr.cohensdCI The distribution of Cohen's _d_
pwr.confIntd The distribution of Cohen's _d_
pwr.confIntR Determine required sample size for a given confidence interval width for Pearson's r
pwr.omegasq Power calculations for Omega Squared.
pwr.randomizationSuccess Computations for successful randomization

-- Q --

qCohensd The distribution of Cohen's _d_
qd The distribution of Cohen's _d_
qomegaSq The distribution of Omega Squared
qRsq The distribution of R squared (as obtained in a regression analysis)

-- R --

rawDataDiamondLayer Basic ggplot2 diamond plot layer construction functions
rCohensd The distribution of Cohen's _d_
rd The distribution of Cohen's _d_
regr regr: a simple regression analysis wrapper
regrInfluential Detecting influential cases in regression analyses
reliability Reliability function similar to the SPSS RELIABILITY command
removeExceptionalValues removeExceptionalValues
repeatStr userfriendlyscience basics
repStr userfriendlyscience basics
rMatrix rMatrix
rnwString rnwString functions
rnwString.generate rnwString functions
rnwString.initiate rnwString functions
rnwString.terminate rnwString functions
romegaSq The distribution of Omega Squared
rRsq The distribution of R squared (as obtained in a regression analysis)

-- S --

safeRequire userfriendlyscience basics
samplingDistribution normalityAssessment and samplingDistribution
sanitizeLatexString rnwString functions
scaleDiagnosis scaleDiagnosis
scaleDiagnosisToPDF scaleDiagnosisToPDF
scaleInspection scaleInspection and a number of useful helper functions
scaleReliability scaleStructure
scaleStructure scaleStructure
scatterMatrix scatterMatrix
scatterPlot Easy ggplot2 scatter plots
sdConfInt scaleInspection and a number of useful helper functions
setCaptionNumbering Convenience function for numbered captions in knitr (and so, RMarkdown)
setFigCapNumbering Automatic caption numbering knitr hooks for figures and tables
setTabCapNumbering Automatic caption numbering knitr hooks for figures and tables
sharedSubString sharedSubString
showPearsonPower Visualisation of the power of a Pearson correlation test
simDataSet simDataSet
Singh Verbal and physical aggression scores from Singh et al. (2007)
sort.associationMatrix sort.associationMatrix
subdeterminantProducts Determinant Structure specification
subdeterminants Determinant Structure specification

-- T --

testRetestAlpha testRetestAlpha
testRetestCES testRetestCES
testRetestReliability testRetestReliability
testRetestSimData testRetestSimData is a simulated dataframe used to demonstrate the testRetestAlpha coefficient function.
textToWords Looking up word frequencies
therapyMonitor therapyMonitor & therapyMonitor.multi
therapyMonitor.multi therapyMonitor & therapyMonitor.multi
therapyMonitorData Data originally published with therapyMonitor
trim userfriendlyscience basics

-- U --

UFS Userfriendlyscience (UFS)
ufs Userfriendlyscience (UFS)
useAll Basic SPSS translation functions
userfriendlyscience Userfriendlyscience (UFS)
userfriendlyscienceBasics userfriendlyscience basics
userfriendlysciencePanderMethods userfriendlyscience methods to pander objects
userfriendlysciencePrintMethods userfriendlyscience print methods

-- V --

validComputations Only compute means or sums for cases with enough nonmissings
validMeans Only compute means or sums for cases with enough nonmissings
validSums Only compute means or sums for cases with enough nonmissings
varsToDiamondPlotDf Basic ggplot2 diamond plot layer construction functions
vecTxt userfriendlyscience basics
vecTxtQ userfriendlyscience basics

-- misc --

%IN% userfriendlyscience basics