Rao-Scott Cochran-Armitage by Slices Trend Test


[Up] [Top]

Documentation for package ‘RSCABS’ version 0.9.4

Help Pages

RSCABS-package Runs the Rao-Scott adjusted Cochran-Armitage trend test by slices (RSCABS) analysis
addHistoSpec Specify data parameters
checkPlot Check the selection for plotting
checkSelction Checks user inputs
convert2Score Converts any object that is not zero or a positive number to NA
detailedResults2HTML Saves results as an HTML file
detailedResults2Output Print results to the GUI window
exampleHistData Example histology data
filterData Filters problematic data
getDir Attain the name of a directory
Histopath GUI for analysis of histopathological data
openCB Open a csv file
otherPath Other analyses for histopathological endpoints
plotPath Plot histopathological data
plotRSCABS Plots histopathological data.
popMessage Pops up a message
prepDataRSCABS Prepares data for an RSCABS analysis
RSCABK Runs the kth slice of RSCABS
RSCABS Runs the Rao-Scott adjusted Cochran-Armitage trend test by slices (RSCABS) analysis
RSCABSMain Cleans data and runs RSCABS when called from the GUI interface
runDetailedResults Attain detailed results on an endpoint
runEffectSelect Runs a detailed analysis on an endpoint
runRSCABS Runs RSCABS
runStdSubset Subset the data used in Histopath
saveCB Attain the name of a file to be saved
saveFile Saves a data set
selectPara Window to declare the names of variables and values
setPlotParms Sets the default plotting parameters for RSCABS
stepDownRSCABS Performs the step down aspect of RSCABS
stepKRSCABS Steps through the severity score for a given effect
subsetDataKeep Subsets data