as.data.frame | Convert a 'Map' Object to a Data Frame |
as.Map | Convert a Data Frame to a 'Map' Object. |
as.Map-method | Convert a Data Frame to a 'Map' Object. |
bov80K | A 'Map' object with 80K bovine SNPs |
Chrom | The Chromosome class |
Chrom-class | The Chromosome class |
Locus | The Locus class |
Locus-class | The Locus class |
Map | The Map class |
Map-class | The Map class |
namesOfChrom | Extract chromosome indexes or names |
namesOfChrom,Chrom | Extract chromosome indexes or names |
namesOfChrom,Map | Extract chromosome indexes or names |
namesOfChrom-method | Extract chromosome indexes or names |
newMap | Create a new 'Map' object. |
newMap,character | Create a new 'Map' object. |
newMap,data.frame | Create a new 'Map' object. |
newMap-method | Create a new 'Map' object. |
numberOfLoci | Extract the number of loci on each chromosome |
numberOfLoci,Chrom | Extract the number of loci on each chromosome |
numberOfLoci,Map | Extract the number of loci on each chromosome |
numberOfLoci-method | Extract the number of loci on each chromosome |
plotMap | Plotting a Map object. |
plotMap-method | Plotting a Map object. |
scoreE | Compute the E score |
scoreE,Chrom-methods | Compute the E score |
scoreE-method | Compute the E score |
scoreLocal | Compute the weighted local score |
scoreLocal-method | Compute the weighted local score |
scoreU | Compute the Uniformness(U) score |
scoreU-method | Compute the Uniformness(U) score |
selectLocalOptimalSNPs | Select locally-optimized SNPs on one or more chromosomes |
selectLocalOptimalSNPs-method | Select locally-optimized SNPs on one or more chromosomes |
summary | Summary statiscs for a Map object. |