###1. Figure 1: rmcorr and reg plot
###2. Figure 2: rmcorr vs OLS reg 
###3. Figure 3: rmcorr w/data transformations 
###4. Figure 4: Power curves 
## png
## 2## null device
## 1###5. Brain volume and age rmcorr and simple reg/cor results and Figure 5 #### a) rmcorr and simple reg results
## Warning in rmcorr(participant = Participant, measure1 = Age, measure2 =
## Volume, : 'Participant' coerced into a factor##
## Repeated measures correlation
##
## r
## -0.7044077
##
## degrees of freedom
## 71
##
## p-value
## 3.561007e-12
##
## 95% confidence interval
## -0.8053581 -0.5637514##
## Pearson's product-moment correlation
##
## data: avgRaz2005$Age and avgRaz2005$Volume
## t = -3.4912, df = 70, p-value = 0.000837
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
## -0.5662456 -0.1684542
## sample estimates:
## cor
## -0.3850943##
## Call:
## lm(formula = Volume ~ Age, data = raz2005)
##
## Coefficients:
## (Intercept) Age
## 151.9068 -0.3399##
## Pearson's product-moment correlation
##
## data: raz2005$Age and raz2005$Volume
## t = -5.165, df = 142, p-value = 7.984e-07
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
## -0.5269809 -0.2503991
## sample estimates:
## cor
## -0.3976861
## png
## 2## null device
## 1###6. Visual search rmcorr and simple reg/cor results and Figure 6 #### a) rmcorr and simple reg results
## Warning in rmcorr(participant = sub, measure1 = rt, measure2 = acc, dataset
## = gilden2010): 'sub' coerced into a factor##
## Repeated measures correlation
##
## r
## -0.406097
##
## degrees of freedom
## 32
##
## p-value
## 0.01716871
##
## 95% confidence interval
## -0.6611673 -0.06687244##
## Call:
## lm(formula = acc ~ rt, data = gildenMeans)
##
## Coefficients:
## (Intercept) rt
## 0.8132 0.1777##
## Pearson's product-moment correlation
##
## data: gildenMeans$rt and gildenMeans$acc
## t = 2.1966, df = 9, p-value = 0.05565
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
## -0.01409542 0.87910346
## sample estimates:
## cor
## 0.5907749##
## Call:
## lm(formula = acc ~ rt, data = gilden2010)
##
## Coefficients:
## (Intercept) rt
## 0.8612 0.1111##
## Pearson's product-moment correlation
##
## data: gilden2010$rt and gilden2010$acc
## t = 2.6401, df = 42, p-value = 0.01158
## alternative hypothesis: true correlation is not equal to 0
## 95 percent confidence interval:
## 0.09053513 0.60625185
## sample estimates:
## cor
## 0.3772751
## png
## 2## null device
## 1##Appendix A: Rmcorr minus standard corr power
## png
## 2## null device
## 1## Warning in rmcorr(participant = Participant, measure1 = Age, measure2 =
## Volume, : 'Participant' coerced into a factor#Null multi-level model: Random intercept and fixed slope
null.vol <- lmer(Volume ~ Age + (1 | Participant), data = raz2005, REML = FALSE)
#Model fit
null.vol## Linear mixed model fit by maximum likelihood ['lmerMod']
## Formula: Volume ~ Age + (1 | Participant)
## Data: raz2005
## AIC BIC logLik deviance df.resid
## 977.4705 989.3497 -484.7352 969.4705 140
## Random effects:
## Groups Name Std.Dev.
## Participant (Intercept) 11.287
## Residual 3.024
## Number of obs: 144, groups: Participant, 72
## Fixed Effects:
## (Intercept) Age
## 163.7090 -0.5533## Computing profile confidence intervals ...## 2.5 % 97.5 %
## .sig01 9.5208850 13.6036847
## .sigma 2.5713387 3.6236647
## (Intercept) 155.1479333 172.3796869
## Age -0.7016833 -0.4056009#Model fitted values and confidence intervals for each participant (L1 effects)
set.seed(9999)
L1.predict.raz <- predictInterval(null.vol, newdata = raz2005, n.sims = 1000)
L1.predict.raz <- cbind(raz2005$Participant, L1.predict.raz)
apatheme = theme_bw() +
theme(panel.grid.major=element_blank(),
panel.grid.minor=element_blank(),
panel.border=element_blank(),
axis.line=element_line(),
legend.position="none",
#text=element_text(family='Times'), #Need- https://github.com/wch/extrafont + Ghostscript
#legend.title=element_blank(),
axis.line.x = element_line(color="black", size = 0.9),
axis.line.y = element_line(color="black", size = 0.9),
axis.text.x = element_text(size = 12),
axis.text.y = element_text(size = 12),
axis.title.x = element_text(size = 12),
axis.title.y = element_text(size = 12))
#Create custom color palette
Blues<-brewer.pal(9,"Blues")
ggplot(raz2005, aes(x = Age, y = Volume, group = Participant, color = Participant)) +
geom_line(aes(y = predict(null.vol)), linetype = 2) +
geom_line(aes(y = brainvolage.rmc$model$fitted.values), linetype = 1) +
geom_ribbon(aes(ymin = L1.predict.raz$lwr,
ymax = L1.predict.raz$upr,
group = L1.predict.raz$`raz2005$Participant`,
linetype = NA), alpha = 0.07) +
apatheme +
labs(title = "Rmcorr and Random Intercept Multi-Level Model:\n Raz et al. 2005 Data", x = "Age",
y = expression(Cerebellar~Hemisphere~Volume~(cm^{3}))) +
geom_point(aes(colour = Participant)) +
scale_colour_gradientn(colours=Blues) + theme(plot.title = element_text(hjust = 0.5)) +
geom_abline(intercept = fixef(null.vol)[1], slope = fixef(null.vol)[2], colour = "black", size = 1, linetype = 2)
## Warning in grid.Call.graphics(C_polygon, x$x, x$y, index): semi-
## transparency is not supported on this device: reported only once per page## Warning in rmcorr(participant = sub, measure1 = rt, measure2 = acc, dataset
## = gilden2010): 'sub' coerced into a factornull.vis <- lmer(acc ~ rt + (1 | sub), data = gilden2010, REML = FALSE)
#Model 1: Random intercept + random slope for RT
model1.vis <- lmer(acc ~ rt + (1 + rt | sub), data = gilden2010, REML = FALSE)
#Model Comparison
#a) Chi-Square
anova(null.vis, model1.vis)## Data: gilden2010
## Models:
## null.vis: acc ~ rt + (1 | sub)
## model1.vis: acc ~ rt + (1 + rt | sub)
## Df AIC BIC logLik deviance Chisq Chi Df Pr(>Chisq)
## null.vis 4 -197.41 -190.27 102.70 -205.41
## model1.vis 6 -193.46 -182.75 102.73 -205.46 0.0497 2 0.9754# #b) Evidence ratio using AIC
# Models.vis<-list()
# Models.vis<-c(null.vis, model1.vis)
#
# ModelTable2<-AICcmodavg::aictab(Models.vis, modnames = c("null", "Model 1"))
# ModelTable2
# evidence(ModelTable2)
#Estimating CIs: Convergence problems with model 1
confint(model1.vis)## Computing profile confidence intervals ...## Warning in zeta(shiftpar, start = opt[seqpar1][-w]): NAs detected in
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## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in FUN(X[[i]], ...): non-monotonic profile for .sig01## Warning in zeta(shiftpar, start = opt[seqpar1][-w]): NAs detected in
## profiling## Warning in FUN(X[[i]], ...): non-monotonic profile for .sig02## Warning in zeta(shiftpar, start = opt[seqpar1][-w]): NAs detected in
## profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in FUN(X[[i]], ...): non-monotonic profile for .sig03## Warning in zeta(shiftpar, start = opt[seqpar1][-w]): NAs detected in
## profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in nextpar(mat, cc, i, delta, lowcut, upcut): Last two rows have
## identical or NA .zeta values: using minstep## Warning in zetafun(np, ns): NAs detected in profiling## Warning in FUN(X[[i]], ...): non-monotonic profile for .sigma## Warning in min(diff(obj1[, 2]) < (-non.mono.tol), na.rm = TRUE): no non-
## missing arguments to min; returning Inf## Warning in confint.thpr(pp, level = level, zeta = zeta): non-monotonic
## profile for .sig01## Warning in min(diff(obj1[, 2]) < (-non.mono.tol), na.rm = TRUE): no non-
## missing arguments to min; returning Inf## Warning in confint.thpr(pp, level = level, zeta = zeta): non-monotonic
## profile for .sig02## Warning in min(diff(obj1[, 2]) < (-non.mono.tol), na.rm = TRUE): no non-
## missing arguments to min; returning Inf## Warning in confint.thpr(pp, level = level, zeta = zeta): non-monotonic
## profile for .sig03## Warning in min(diff(obj1[, 2]) < (-non.mono.tol), na.rm = TRUE): no non-
## missing arguments to min; returning Inf## Warning in confint.thpr(pp, level = level, zeta = zeta): non-monotonic
## profile for .sigma## 2.5 % 97.5 %
## .sig01 NA NA
## .sig02 NA NA
## .sig03 NA NA
## .sigma NA NA
## (Intercept) 0.9145872 1.06378202
## rt -0.1545674 0.03365649## NULL## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite
## Warning in chol.default(sigma, pivot = TRUE): the matrix is either rank-
## deficient or indefinite## fit upr lwr
## 1 0.8663921 0.8960911 0.8352834
## 2 0.8683328 0.8992487 0.8385416
## 3 0.8707392 0.8997926 0.8393783
## 4 0.8725921 0.9043416 0.8411910
## 5 0.9429408 0.9732033 0.9159477
## 6 0.9432317 0.9722813 0.9162447
## 7 0.9500210 0.9787767 0.9220924
## 8 0.9521214 0.9792170 0.9237838
## 9 0.9481531 0.9752950 0.9207013
## 10 0.9557800 0.9845003 0.9267690
## 11 0.9559260 0.9853145 0.9268077
## 12 0.9596373 0.9887585 0.9285570
## 13 0.9443762 0.9730895 0.9144356
## 14 0.9430304 0.9705867 0.9121713
## 15 0.9481908 0.9777422 0.9189827
## 16 0.9500671 0.9785099 0.9180511
## 17 0.9546495 0.9828558 0.9234050
## 18 0.9511327 0.9826637 0.9211189
## 19 0.9583312 0.9867742 0.9280771
## 20 0.9601209 0.9901522 0.9312054
## 21 0.9227970 0.9488310 0.8935667
## 22 0.9244905 0.9553423 0.8959147
## 23 0.9277638 0.9569938 0.8986045
## 24 0.9300479 0.9599095 0.9000854
## 25 0.9625120 0.9928166 0.9347766
## 26 0.9680942 0.9978028 0.9390448
## 27 0.9706817 1.0010773 0.9416283
## 28 0.9749072 1.0033886 0.9446229
## 29 0.9337349 0.9613852 0.9051130
## 30 0.9427612 0.9688829 0.9133652
## 31 0.9495471 0.9767042 0.9189271
## 32 0.9506714 0.9813414 0.9226072
## 33 0.9092407 0.9374046 0.8801579
## 34 0.9081572 0.9380433 0.8783810
## 35 0.9101267 0.9393227 0.8784184
## 36 0.9130454 0.9411353 0.8840514
## 37 0.9530667 0.9841688 0.9233230
## 38 0.9633380 0.9921141 0.9363199
## 39 0.9616432 0.9909589 0.9335431
## 40 0.9655960 0.9935497 0.9362398
## 41 0.9739773 1.0029520 0.9440084
## 42 0.9725510 1.0019453 0.9447096
## 43 0.9767113 1.0060775 0.9455759
## 44 0.9756514 1.0049779 0.9452859## NULL## Computing profile confidence intervals ...## 2.5 % 97.5 %
## .sig01 0.02138120 0.05796124
## .sigma 0.01294851 0.02139924
## (Intercept) 0.91815424 1.05718722
## rt -0.15404840 0.02955915#Model fitted values and confidence intervals for each participant (L1 effects)
set.seed(9999)
L1.predict.gilden <- predictInterval(null.vis, newdata = gilden2010, n.sims = 1000)
L1.predict.gilden <- cbind(gilden2010$sub, L1.predict.gilden)
apatheme = theme_bw() +
theme(panel.grid.major=element_blank(),
panel.grid.minor=element_blank(),
panel.border=element_blank(),
axis.line=element_line(),
legend.position="none",
#text=element_text(family='Times'), #Need- https://github.com/wch/extrafont + Ghostscript
#legend.title=element_blank(),
axis.line.x = element_line(color="black", size = 0.9),
axis.line.y = element_line(color="black", size = 0.9),
axis.text.x = element_text(size = 12),
axis.text.y = element_text(size = 12),
axis.title.x = element_text(size = 12),
axis.title.y = element_text(size = 12))
#Create custom color palette
Colors12<-brewer.pal(12,"Paired")
ggplot(gilden2010, aes(x = rt, y = acc, group = sub, color = sub)) +
geom_line(aes(y = predict(null.vis)), linetype = 2) +
geom_line(aes(y = vissearch.rmc$model$fitted.values), linetype = 1) +
geom_ribbon(aes(ymin = L1.predict.gilden$lwr,
ymax = L1.predict.gilden$upr,
group = L1.predict.gilden$`gilden2010$sub`,
linetype = NA),
alpha = 0.07) +
apatheme + theme(plot.title = element_text(hjust = 0.5)) +
labs(title = "Rmcorr and Random Intercept Multi-Level Model:\n Gilden et al. 2010 Data", x = "Response Time (Seconds)", y = "Accuracy") +
geom_point(aes(colour = sub)) +
scale_colour_gradientn(colours=Colors12) +
geom_abline(intercept = fixef(null.vis)[1], slope = fixef(null.vis)[2], colour = "black", size = 1, linetype = 2) +
scale_y_continuous(breaks=seq(0.80, 1.0, 0.05)) +
scale_x_continuous(breaks=seq(0.50, 0.9, 0.1)) 
## Warning in grid.Call.graphics(C_polygon, x$x, x$y, index): semi-
## transparency is not supported on this device: reported only once per page