Generate 'BART' File


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Documentation for package ‘genBart’ version 1.0.1

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clusterData Hierarchical clustering of normalized expression data
crossCorr Cross Correlations
gene.symbols Gene Symbols
genFile Generate and Update BART Result files
genModelResults Generate formatted results file
genModScores Generate modular (gene set) maps for plotting
metaData Declare meta data information for downstream analysis
modules Baylor Modules
normalizeData Data Normalization
runBart Run BART Shiny App
runQgen Run Q-Gen (generalized QuSAGE) algorithm using gene level statistics
tb.design Microarray design file
tb.expr Microarray data on cynomolgus macaques infected with M. tuberculosis
tb.flow Flow data on cynomolgus macaques infected with M. tuberculosis
tb.flow.des Flow design file
updateFile Generate and Update BART Result files