Spatio-Temporal Under-Five Mortality Methods for Estimation


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Documentation for package ‘SUMMER’ version 0.3.0

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SUMMER-package SUMMER package documentation.
aggregateSurvey Aggregate estimators from different surveys.
BRFSS The BRFSS dataset
ChangeRegion Function to map region names to a common set.
DemoData Fake dataset for vignette.
DemoData2 Fake dataset for vignette.
DemoMap Map dataset for vignette.
DemoMap2 Map dataset for vignette.
expit Expit transformation
fitGeneric Fit space-time smoothing models for a generic outcome from complex surveys.
fitINLA Fit space-time smoothing models to mortality rates
fitINLA2 Fit cluster-level space-time smoothing models to mortality rates
getAdjusted Adjust direct estimates and their associated variances
getAmat Extract adjacency matrix from the map
getBirths Function to get Births file from DHS .dta files.
getCounts Aggregate person-month data into counts and totals by groups.
getDiag Make diagnostic plots
getDirect Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for a single survey.
getDirectList Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for multiple surveys.
getSmoothed Function to obtain projected estimates from INLA for each time and region.
hatchPlot Makes map plot with uncertainty hatching.
iid.new New random IID models for m-year to period random effects
iid.new.pc New random IID models for m-year to period random effects
KenData Auxiliary data for Kenya 2014 DHS.
KingCounty Map of King County
logit Logit transformation
mapPlot Makes map plot.
mapPoints Map GPS points to polygon regions
plot.SUMMERproj Plot projection output.
read_shape Function to read shape files.
rst Simulate spatial and temporal random effects
rw.new New random walk 1 and 2 models for m-year to period random effects
rw.new.pc New random walk 1 and 2 models for m-year to period random effects
simhyper Function to simulate hyperpriors from an adjacency matrix.
st.new New Type I to IV space time interaction models for m-year to period random effects
st.new.pc New Type I to IV space time interaction models for m-year to period random effects
SUMMER SUMMER package documentation.