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| asBCdat | Data Type Conversion |
| BCdat | BCdat class |
| BCdat-class | BCdat class |
| BC_dat | Barcode distribution of an example experiment. |
| checkBarcodeData | checkBarcodeData |
| createGDF | Creating a gdf File |
| errorCorrection | Error Correction |
| errorCorrection_multiple | Error Correction for multiple objects |
| extractBarcodes | Barcode extraction |
| extractBarcodes_multiple | Barcode extraction for multiple backbones |
| extractBarcodes_single | Barcode extraction for a single backbone |
| genBaRcode_app | Shiny App |
| generateKirchenplot | Plotting a Kirchenplot |
| generateTimeSeriesData | Generating Time Series Data Object |
| getBackbone | Predefined Barcode Backbone Sequences |
| ggplotDistanceGraph | Plotting a Distance Network |
| hybridsIdentification | Identifies hybrid barcodes |
| ori_BCs | List of Barcodes. |
| plotClusterGgTree | Plotting a Cluster ggTree |
| plotClusterTree | Plotting a Cluster Tree |
| plotDistanceIgraph | Plotting a Distance Network |
| plotDistanceVisNetwork | Plotting a Distance Network |
| plotNucFrequency | Plotting Nucleotide Frequency |
| plotQualityScoreDis | Plotting Quality Score Distribution |
| plotQualityScorePerCycle | Plotting Quality Score per Cycle |
| plotReadFrequencies | Plotting a Barplot |
| plotSeqLogo | Plots a sequence logo |
| plotTimeSeries | Plotting Time Series Data |
| plotVennDiagramm | Plotting a VennDiagram |
| prepareDatObject | Data Object Preparation |
| processingRawData | Data processing |
| qualityFiltering | Quality Filtering |
| readBCdat | Data Input |