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| cpgen-package | cpgen - Parallel genomic evaluations |
| %**% | Square matrix power operator |
| %c% | (Parallel) Matrix product operator |
| ccolmv | Colwise means or variances |
| ccov | ccov |
| ccross | ccross |
| cCV | Generate phenotype vectors for cross validation |
| cGBLUP | Genomic BLUP |
| cgrm | Genomic Relationship Matrices |
| cgrm.A | Additive Genomic Relationship Matrix |
| cgrm.D | Dominance Genomic Relationship Matrix |
| cGWAS | Genomewide Association Study |
| cGWAS.emmax | Genomewide Association Study - EMMAX |
| check_openmp | Check OpenMP-support. |
| clmm | Linear Mixed Models using Gibbs Sampling |
| cmaf | cmaf |
| cpgen-parallel | Multithreading using 'cpgen' |
| cscale_inplace | cscale_inplace |
| cscanx | Read in a matrix from a file |
| csolve | csolve |
| cSSBR | Single Step Bayesian Regression |
| cSSBR.setup | Preparing Model terms for Single Step Bayesian Regression |
| get_cor | Compute the prediction accuracy from Cross Validition |
| get_max_threads | Get the maximum number of threads available |
| get_num_threads | Get the number of threads for 'cpgen' |
| get_pred | Extract predictions vectors of an object returned by 'clmm' using multpile phenotypes |
| rand_data | Generate random data for test purposes |
| set_num_threads | Set the number of OpenMP threads used by the functions of package 'cpgen' |