Simulate Genotypes from the BN-PSD Admixture Model


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Documentation for package ‘bnpsd’ version 1.0.4

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bnpsd-package A package for modeling and simulating an admixed population
bnpsd A package for modeling and simulating an admixed population
coanc Construct the coancestry matrix of an admixture model
coanc_to_kinship Transform coancestry matrix to kinship matrix
fixed_loci Identify fixed loci
fst Calculate FST for the admixed individuals
q1d Construct admixture proportion matrix for 1D geography
q1dc Construct admixture proportion matrix for circular 1D geography
qis Construct admixture proportion matrix for independent subpopulations
rbnpsd Simulate random allele frequencies and genotypes from the BN-PSD admixture model
rgeno Draw genotypes from the admixture model
rpanc Draw uniform ancestral allele frequencies
rpiaf Construct individual-specific allele frequency matrix
rpint Draw intermediate subpopulation allele frequencies